RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 ABCB5Q2M3G0 1257 aa20.32■□□□□ 0.84
HDAC6-235ENST00000495515 SLC44A5Q8NCS7 719 aa20.32■□□□□ 0.84
HDAC6-235ENST00000495515 OPTNQ96CV9 577 aa20.32■□□□□ 0.84
HDAC6-235ENST00000495515 TBC1D2Q9BYX2 928 aa20.32■□□□□ 0.84
HDAC6-235ENST00000495515 WDR33Q9C0J8 1336 aaKnown RBP20.31■□□□□ 0.84
HDAC6-235ENST00000495515 GDF11O95390 407 aa20.31■□□□□ 0.84
HDAC6-235ENST00000495515 PCP11498 1178 aaKnown RBP20.31■□□□□ 0.84
HDAC6-235ENST00000495515 VEGFBP49765 207 aa20.31■□□□□ 0.84
HDAC6-235ENST00000495515 SPRYD7Q5W111 196 aa20.31■□□□□ 0.84
HDAC6-235ENST00000495515 ZNF444Q8N0Y2 327 aaPredicted RBP20.31■□□□□ 0.84
HDAC6-235ENST00000495515 STK11IPQ8N1F8 1099 aa20.31■□□□□ 0.84
HDAC6-235ENST00000495515 MAP4K1Q92918 833 aa20.31■□□□□ 0.84
HDAC6-235ENST00000495515 OTUD5Q96G74 571 aa20.31■□□□□ 0.84
HDAC6-235ENST00000495515 WNK4Q96J92 1243 aa20.31■□□□□ 0.84
HDAC6-235ENST00000495515 RNF41Q9H4P4 317 aaPredicted RBP20.31■□□□□ 0.84
HDAC6-235ENST00000495515 AS3MTQ9HBK9 375 aa20.31■□□□□ 0.84
HDAC6-235ENST00000495515 MPHOSPH10O00566 681 aaKnown RBP20.3■□□□□ 0.84
HDAC6-235ENST00000495515 REC8O95072 547 aa20.3■□□□□ 0.84
HDAC6-235ENST00000495515 PTPRAP18433 802 aa20.3■□□□□ 0.84
HDAC6-235ENST00000495515 PTH1RQ03431 593 aa20.3■□□□□ 0.84
HDAC6-235ENST00000495515 PPIL2Q13356 520 aa20.3■□□□□ 0.84
HDAC6-235ENST00000495515 ZBTB21Q9ULJ3 1066 aa20.3■□□□□ 0.84
HDAC6-235ENST00000495515 BAZ2AQ9UIF9 1905 aaKnown RBP20.29■□□□□ 0.84
HDAC6-235ENST00000495515 USP17L5A8MUK1 530 aa20.29■□□□□ 0.84
HDAC6-235ENST00000495515 FAM155AB1AL88 458 aaPredicted RBP20.29■□□□□ 0.84
HDAC6-235ENST00000495515 SMIM22K7EJ46 135 aa20.29■□□□□ 0.84
HDAC6-235ENST00000495515 GH2P01242 217 aa20.29■□□□□ 0.84
HDAC6-235ENST00000495515 MAP2K2P36507 400 aa20.29■□□□□ 0.84
HDAC6-235ENST00000495515 NT5C2P49902 561 aa20.29■□□□□ 0.84
HDAC6-235ENST00000495515 HAND2P61296 217 aa20.29■□□□□ 0.84
HDAC6-235ENST00000495515 CTDSPL2Q05D32 466 aa20.29■□□□□ 0.84
HDAC6-235ENST00000495515 RRP1BQ14684 758 aaKnown RBP20.29■□□□□ 0.84
HDAC6-235ENST00000495515 TMEM179Q6ZVK1 233 aa20.29■□□□□ 0.84
HDAC6-235ENST00000495515 REM2Q8IYK8 340 aaPredicted RBP20.29■□□□□ 0.84
HDAC6-235ENST00000495515 LSG1Q9H089 658 aaKnown RBP20.29■□□□□ 0.84
HDAC6-235ENST00000495515 ZHX2Q9Y6X8 837 aa20.29■□□□□ 0.84
HDAC6-235ENST00000495515 SIPA1L1O43166 1804 aa20.29■□□□□ 0.84
HDAC6-235ENST00000495515 AKNAD1Q5T1N1 836 aa20.28■□□□□ 0.84
HDAC6-235ENST00000495515 MFSD6Q6ZSS7 791 aa20.28■□□□□ 0.84
HDAC6-235ENST00000495515 MANSC4A6NHS7 340 aaPredicted RBP20.27■□□□□ 0.84
HDAC6-235ENST00000495515 ORC4O43929 436 aa20.27■□□□□ 0.84
HDAC6-235ENST00000495515 PRDM1O75626 825 aa20.27■□□□□ 0.84
HDAC6-235ENST00000495515 HSPA1AP0DMV8 641 aaKnown RBP20.27■□□□□ 0.84
HDAC6-235ENST00000495515 HSPA1BP0DMV9 641 aaKnown RBP20.27■□□□□ 0.84
HDAC6-235ENST00000495515 RASA1P20936 1047 aa20.27■□□□□ 0.84
HDAC6-235ENST00000495515 GTF2A2P52657 109 aa20.27■□□□□ 0.84
HDAC6-235ENST00000495515 MKRN3Q13064 507 aaKnown RBP20.27■□□□□ 0.84
HDAC6-235ENST00000495515 RAB3GAP1Q15042 981 aa20.27■□□□□ 0.84
HDAC6-235ENST00000495515 STAG1Q8WVM7 1258 aa20.27■□□□□ 0.84
HDAC6-235ENST00000495515 TOMM22Q9NS69 142 aa20.27■□□□□ 0.84
HDAC6-235ENST00000495515 RBM8AQ9Y5S9 174 aaKnown RBP20.27■□□□□ 0.84
HDAC6-235ENST00000495515 CXCL11O14625 94 aa20.26■□□□□ 0.83
HDAC6-235ENST00000495515 FGRP09769 529 aa20.26■□□□□ 0.83
HDAC6-235ENST00000495515 AKR1B1P15121 316 aa20.26■□□□□ 0.83
HDAC6-235ENST00000495515 INHBEP58166 350 aa20.26■□□□□ 0.83
HDAC6-235ENST00000495515 SREBF2Q12772 1141 aa20.26■□□□□ 0.83
HDAC6-235ENST00000495515 SNAPC2Q13487 334 aa20.26■□□□□ 0.83
HDAC6-235ENST00000495515 RNF20Q5VTR2 975 aa20.26■□□□□ 0.83
HDAC6-235ENST00000495515 ZNF280CQ8ND82 737 aa20.26■□□□□ 0.83
HDAC6-235ENST00000495515 CNKSR2Q8WXI2 1034 aa20.26■□□□□ 0.83
HDAC6-235ENST00000495515 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.26■□□□□ 0.83
HDAC6-235ENST00000495515 OTOFQ9HC10 1997 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 IRF6O14896 467 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 EPB41L2O43491 1005 aaKnown RBP20.25■□□□□ 0.83
HDAC6-235ENST00000495515 TSPY3P0CV98 308 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 TSPY8P0CW00 308 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 GJA5P36382 358 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 KIF23Q02241 960 aaPredicted RBP20.25■□□□□ 0.83
HDAC6-235ENST00000495515 PPP4R3BQ5MIZ7 849 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 WDR18Q9BV38 432 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 CNNM2Q9H8M5 875 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 KANSL2Q9H9L4 492 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 KCNH4Q9UQ05 1017 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 AFG3L2Q9Y4W6 797 aa20.25■□□□□ 0.83
HDAC6-235ENST00000495515 LAMB1P07942 1786 aa20.24■□□□□ 0.83
HDAC6-235ENST00000495515 TSPY2A6NKD2 308 aa20.24■□□□□ 0.83
HDAC6-235ENST00000495515 RANBP6O60518 1105 aaKnown RBP20.24■□□□□ 0.83
HDAC6-235ENST00000495515 AOC2O75106 756 aa20.24■□□□□ 0.83
HDAC6-235ENST00000495515 CETPP11597 493 aa20.24■□□□□ 0.83
HDAC6-235ENST00000495515 JAG1P78504 1218 aa20.24■□□□□ 0.83
HDAC6-235ENST00000495515 TRDNQ13061 729 aa20.24■□□□□ 0.83
HDAC6-235ENST00000495515 SEPT2Q15019 361 aa20.24■□□□□ 0.83
HDAC6-235ENST00000495515 RRP12Q5JTH9 1297 aaKnown RBP20.24■□□□□ 0.83
HDAC6-235ENST00000495515 TBC1D10CQ8IV04 446 aa20.24■□□□□ 0.83
HDAC6-235ENST00000495515 ESR2Q92731 530 aa20.24■□□□□ 0.83
HDAC6-235ENST00000495515 KRT23Q9C075 422 aa20.24■□□□□ 0.83
HDAC6-235ENST00000495515 TRIM75PA6NK02 468 aa20.23■□□□□ 0.83
HDAC6-235ENST00000495515 CYP21A2P08686 494 aa20.23■□□□□ 0.83
HDAC6-235ENST00000495515 TFAP4Q01664 338 aa20.23■□□□□ 0.83
HDAC6-235ENST00000495515 SPP2Q13103 211 aa20.23■□□□□ 0.83
HDAC6-235ENST00000495515 DOCK1Q14185 1865 aa20.23■□□□□ 0.83
HDAC6-235ENST00000495515 NEDD1Q8NHV4 660 aa20.23■□□□□ 0.83
HDAC6-235ENST00000495515 FEZ1Q99689 392 aa20.23■□□□□ 0.83
HDAC6-235ENST00000495515 NBPF3Q9H094 633 aa20.23■□□□□ 0.83
HDAC6-235ENST00000495515 SH2D4AQ9H788 454 aa20.23■□□□□ 0.83
HDAC6-235ENST00000495515 ARHGEF10LQ9HCE6 1279 aa20.23■□□□□ 0.83
HDAC6-235ENST00000495515 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.23■□□□□ 0.83
HDAC6-235ENST00000495515 C19orf81C9J6K1 198 aa20.22■□□□□ 0.83
HDAC6-235ENST00000495515 USP17L10C9JJH3 530 aa20.22■□□□□ 0.83
HDAC6-235ENST00000495515 GUCY1A2P33402 732 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms