RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 IQSEC3Q9UPP2 1182 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-230ENST00000495090 TBC1D2BQ9UPU7 963 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 SRPRBQ9Y5M8 271 aaKnown RBP10.98□□□□□ -0.65
SYNE1-230ENST00000495090 UBN2Q6ZU65 1347 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 MST1RQ04912 1400 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 TJP1Q07157 1748 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 SYNRGQ9UMZ2 1314 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 TEX33O43247 280 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 SYF2O95926 243 aaKnown RBP10.97□□□□□ -0.65
SYNE1-230ENST00000495090 GYPCP04921 128 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 ARHGAP25P42331 645 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 USP14P54578 494 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 WASHC4Q2M389 1173 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 HSP90AA4PQ58FG1 418 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 CYP26C1Q6V0L0 522 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 MMS22LQ6ZRQ5 1243 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 CEP89Q96ST8 783 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 MYCBPQ99417 103 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-230ENST00000495090 MYH7P12883 1935 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 ZC3H4Q9UPT8 1303 aaKnown RBP10.97□□□□□ -0.65
SYNE1-230ENST00000495090 PSMD14O00487 310 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 GPAA1O43292 621 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 ZBTB43O43298 467 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 FMNL1O95466 1100 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-230ENST00000495090 MMP1P03956 469 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 SAFBQ15424 915 aaKnown RBP eCLIP10.97□□□□□ -0.65
SYNE1-230ENST00000495090 WWC2Q6AWC2 1192 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 ZNF662Q6ZS27 426 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 TRAPPC11Q7Z392 1133 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 ZNF496Q96IT1 587 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-230ENST00000495090 HPCAL4Q9UM19 191 aa10.97□□□□□ -0.65
SYNE1-230ENST00000495090 MYO5AQ9Y4I1 1855 aaKnown RBP10.97□□□□□ -0.65
SYNE1-230ENST00000495090 CDHR2Q9BYE9 1310 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 LRRC10BA6NIK2 292 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 RANBP6O60518 1105 aaKnown RBP10.96□□□□□ -0.65
SYNE1-230ENST00000495090 KCNA6P17658 529 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 CASP14P31944 242 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 LIFRP42702 1097 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 TOB1P50616 345 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-230ENST00000495090 SLC39A6Q13433 755 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 MCTP2Q6DN12 878 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 SH3RF1Q7Z6J0 888 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 RAB11FIP4Q86YS3 637 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 NOA1Q8NC60 698 aaKnown RBP10.96□□□□□ -0.65
SYNE1-230ENST00000495090 COG1Q8WTW3 980 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 RUBCNQ92622 972 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 GSDMAQ96QA5 445 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 CDC5LQ99459 802 aaKnown RBP10.96□□□□□ -0.65
SYNE1-230ENST00000495090 NBPF3Q9H094 633 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 ABHD10Q9NUJ1 306 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.96□□□□□ -0.65
SYNE1-230ENST00000495090 LRP6O75581 1613 aa10.96□□□□□ -0.65
SYNE1-230ENST00000495090 SETD1BQ9UPS6 1966 aaKnown RBP10.96□□□□□ -0.66
SYNE1-230ENST00000495090 NUP188Q5SRE5 1749 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 A0A0U1RQJ8 604 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 GOLGA8AA7E2F4 631 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 ATP5J2-PTCD1G3V325 749 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 PTCD1O75127 700 aaKnown RBP10.96□□□□□ -0.66
SYNE1-230ENST00000495090 IFNAR1P17181 557 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 ERVK-24P63145 666 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 CKAP4Q07065 602 aaKnown RBP10.96□□□□□ -0.66
SYNE1-230ENST00000495090 SPAG1Q07617 926 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 SSRP1Q08945 709 aaKnown RBP10.96□□□□□ -0.66
SYNE1-230ENST00000495090 ZNF827Q17R98 1081 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 NBPF14Q5TI25 921 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 CYB5R4Q7L1T6 521 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 IGDCC4Q8TDY8 1250 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 ATRIPQ8WXE1 791 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 PHKBQ93100 1093 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.96□□□□□ -0.66
SYNE1-230ENST00000495090 PUS7LQ9H0K6 701 aaKnown RBP10.96□□□□□ -0.66
SYNE1-230ENST00000495090 FAM217BQ9NTX9 383 aaPredicted RBP10.96□□□□□ -0.66
SYNE1-230ENST00000495090 CWC25Q9NXE8 425 aaPredicted RBP10.96□□□□□ -0.66
SYNE1-230ENST00000495090 CEP126Q9P2H0 1117 aa10.96□□□□□ -0.66
SYNE1-230ENST00000495090 LIMA1Q9UHB6 759 aaKnown RBP10.96□□□□□ -0.66
SYNE1-230ENST00000495090 CCDC9Q9Y3X0 531 aaKnown RBP10.96□□□□□ -0.66
SYNE1-230ENST00000495090 GLI3P10071 1580 aa10.95□□□□□ -0.66
SYNE1-230ENST00000495090 ATXN2Q99700 1313 aaKnown RBP10.95□□□□□ -0.66
SYNE1-230ENST00000495090 GCP02774 474 aa10.95□□□□□ -0.66
SYNE1-230ENST00000495090 PIP4K2AP48426 406 aaPredicted RBP10.95□□□□□ -0.66
SYNE1-230ENST00000495090 FXR1P51114 621 aaKnown RBP eCLIP10.95□□□□□ -0.66
SYNE1-230ENST00000495090 FKBP4Q02790 459 aaKnown RBP eCLIP10.95□□□□□ -0.66
SYNE1-230ENST00000495090 LRRC24Q50LG9 513 aa10.95□□□□□ -0.66
SYNE1-230ENST00000495090 GBP6Q6ZN66 633 aa10.95□□□□□ -0.66
SYNE1-230ENST00000495090 ACRBPQ8NEB7 543 aa10.95□□□□□ -0.66
SYNE1-230ENST00000495090 SMARCC1Q92922 1105 aaPredicted RBP10.95□□□□□ -0.66
SYNE1-230ENST00000495090 HAUS4Q9H6D7 363 aa10.95□□□□□ -0.66
SYNE1-230ENST00000495090 LY9Q9HBG7 655 aa10.95□□□□□ -0.66
SYNE1-230ENST00000495090 AATFQ9NY61 560 aaKnown RBP eCLIP10.95□□□□□ -0.66
SYNE1-230ENST00000495090 A6NNZ2 444 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 PHACTR2O75167 634 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 RCAN1P53805 252 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 STIM1Q13586 685 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 TUBB8Q3ZCM7 444 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 PAPD7Q5XG87 772 aaKnown RBP10.94□□□□□ -0.66
SYNE1-230ENST00000495090 CCDC91Q7Z6B0 441 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 MICU3Q86XE3 530 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 CERS3Q8IU89 383 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 TBC1D10CQ8IV04 446 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 DIS3L2Q8IYB7 885 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms