RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 SMCR8Q8TEV9 937 aaPredicted RBP40.08■■■■■ 4.01
CBX4-203ENST00000494546 DCP1AQ9NPI6 582 aaPredicted RBP40.08■■■■■ 4.01
CBX4-203ENST00000494546 NAV1Q8NEY1 1877 aa40.07■■■■■ 4.01
CBX4-203ENST00000494546 BCRP11274 1271 aa40.07■■■■■ 4.01
CBX4-203ENST00000494546 MLLT1Q03111 559 aaPredicted RBP40.07■■■■■ 4.01
CBX4-203ENST00000494546 MTMR2Q13614 643 aa40.07■■■■■ 4.01
CBX4-203ENST00000494546 PRKAB2O43741 272 aa40.06■■■■■ 4
CBX4-203ENST00000494546 GH2P01242 217 aa40.06■■■■■ 4
CBX4-203ENST00000494546 PSMC4P43686 418 aa40.06■■■■■ 4
CBX4-203ENST00000494546 SH3D19Q5HYK7 790 aa40.06■■■■■ 4
CBX4-203ENST00000494546 PTCH2Q9Y6C5 1203 aa40.06■■■■■ 4
CBX4-203ENST00000494546 ZSWIM8A7E2V4 1837 aa40.06■■■■■ 4
CBX4-203ENST00000494546 DDX60LQ5H9U9 1706 aaKnown RBP40.05■■■■■ 4
CBX4-203ENST00000494546 PNMA3Q9UL41 463 aa40.05■■■■■ 4
CBX4-203ENST00000494546 GNRH1P01148 92 aa40.04■■■■■ 4
CBX4-203ENST00000494546 CTGFP29279 349 aa40.04■■■■■ 4
CBX4-203ENST00000494546 BACE1P56817 501 aa40.04■■■■■ 4
CBX4-203ENST00000494546 CERKLQ49MI3 558 aaPredicted RBP40.04■■■■■ 4
CBX4-203ENST00000494546 OTUD7AQ8TE49 926 aaPredicted RBP40.04■■■■■ 4
CBX4-203ENST00000494546 ZBTB47Q9UFB7 747 aaPredicted RBP40.04■■■■■ 4
CBX4-203ENST00000494546 FMNL1O95466 1100 aaPredicted RBP40.03■■■■■ 4
CBX4-203ENST00000494546 EVX2Q03828 476 aa40.03■■■■■ 4
CBX4-203ENST00000494546 KBTBD3Q8NAB2 608 aa40.03■■■■■ 4
CBX4-203ENST00000494546 TRIM47Q96LD4 638 aa40.03■■■■■ 4
CBX4-203ENST00000494546 TMOD4Q9NZQ9 345 aa40.03■■■■■ 4
CBX4-203ENST00000494546 TTC41PQ6P2S7 1318 aa40.02■■■■■ 4
CBX4-203ENST00000494546 SHMT1P34896 483 aa40.02■■■■■ 4
CBX4-203ENST00000494546 PABPC4Q13310 644 aaKnown RBP eCLIP40.02■■■■■ 4
CBX4-203ENST00000494546 PUS7LQ9H0K6 701 aaKnown RBP40.02■■■■■ 4
CBX4-203ENST00000494546 ATP8A2Q9NTI2 1148 aa40.02■■■■■ 4
CBX4-203ENST00000494546 MYH7P12883 1935 aa40.02■■■■■ 4
CBX4-203ENST00000494546 LOC285556D6RIA3 1793 aa40.02■■■■■ 4
CBX4-203ENST00000494546 USP17L10C9JJH3 530 aa40.01■■■■■ 4
CBX4-203ENST00000494546 CYP2D6P10635 497 aa40.01■■■■■ 4
CBX4-203ENST00000494546 ABCB5Q2M3G0 1257 aa40.01■■■■■ 4
CBX4-203ENST00000494546 C19orf81C9J6K1 198 aa40■■■■□ 3.99
CBX4-203ENST00000494546 ANKRD45Q5TZF3 282 aa40■■■■□ 3.99
CBX4-203ENST00000494546 ERC2O15083 957 aa39.99■■■■□ 3.99
CBX4-203ENST00000494546 OSBPP22059 807 aa39.99■■■■□ 3.99
CBX4-203ENST00000494546 GABPAQ06546 454 aa39.99■■■■□ 3.99
CBX4-203ENST00000494546 HDAC1Q13547 482 aaPredicted RBP39.99■■■■□ 3.99
CBX4-203ENST00000494546 RAB3GAP1Q15042 981 aa39.99■■■■□ 3.99
CBX4-203ENST00000494546 ARMC5Q96C12 935 aa39.99■■■■□ 3.99
CBX4-203ENST00000494546 CABP5Q9NP86 173 aa39.99■■■■□ 3.99
CBX4-203ENST00000494546 SLC4A4Q9Y6R1 1079 aa39.99■■■■□ 3.99
CBX4-203ENST00000494546 FCGRTP55899 365 aa39.98■■■■□ 3.99
CBX4-203ENST00000494546 SLC9C1Q4G0N8 1177 aa39.98■■■■□ 3.99
CBX4-203ENST00000494546 HOXD10P28358 340 aa39.97■■■■□ 3.99
CBX4-203ENST00000494546 PRMT2P55345 433 aa39.97■■■■□ 3.99
CBX4-203ENST00000494546 ANKRD13CQ8N6S4 541 aa39.97■■■■□ 3.99
CBX4-203ENST00000494546 PI4K2BQ8TCG2 481 aa39.97■■■■□ 3.99
CBX4-203ENST00000494546 GCC1Q96CN9 775 aa39.97■■■■□ 3.99
CBX4-203ENST00000494546 DDRGK1Q96HY6 314 aa39.97■■■■□ 3.99
CBX4-203ENST00000494546 ASCC2Q9H1I8 757 aaPredicted RBP39.97■■■■□ 3.99
CBX4-203ENST00000494546 SRRDQ9UH36 339 aa39.97■■■■□ 3.99
CBX4-203ENST00000494546 GLRX3O76003 335 aaKnown RBP39.96■■■■□ 3.99
CBX4-203ENST00000494546 MX1P20591 662 aa39.96■■■■□ 3.99
CBX4-203ENST00000494546 AAMPQ13685 434 aa39.96■■■■□ 3.99
CBX4-203ENST00000494546 HTTP42858 3142 aa39.96■■■■□ 3.99
CBX4-203ENST00000494546 AMOTL1Q8IY63 956 aa39.95■■■■□ 3.99
CBX4-203ENST00000494546 DYNLL2Q96FJ2 89 aa39.95■■■■□ 3.99
CBX4-203ENST00000494546 FEZ1Q99689 392 aa39.95■■■■□ 3.99
CBX4-203ENST00000494546 RNF113AO15541 343 aaKnown RBP39.94■■■■□ 3.98
CBX4-203ENST00000494546 IRX3P78415 501 aaPredicted RBP39.94■■■■□ 3.98
CBX4-203ENST00000494546 NBPF11Q86T75 865 aa39.94■■■■□ 3.98
CBX4-203ENST00000494546 SLC44A5Q8NCS7 719 aa39.94■■■■□ 3.98
CBX4-203ENST00000494546 MYPNQ86TC9 1320 aa39.93■■■■□ 3.98
CBX4-203ENST00000494546 MPHOSPH10O00566 681 aaKnown RBP39.93■■■■□ 3.98
CBX4-203ENST00000494546 USP17L2Q6R6M4 530 aa39.93■■■■□ 3.98
CBX4-203ENST00000494546 APPBP2Q92624 585 aa39.93■■■■□ 3.98
CBX4-203ENST00000494546 CYP2D7A0A087X1C5 515 aa39.92■■■■□ 3.98
CBX4-203ENST00000494546 USP17L12C9JPN9 530 aa39.92■■■■□ 3.98
CBX4-203ENST00000494546 USP17L21D6R901 530 aa39.92■■■■□ 3.98
CBX4-203ENST00000494546 GCLCP48506 637 aaPredicted RBP39.92■■■■□ 3.98
CBX4-203ENST00000494546 ZYXQ15942 572 aaKnown RBP39.92■■■■□ 3.98
CBX4-203ENST00000494546 EXOC6Q8TAG9 804 aa39.92■■■■□ 3.98
CBX4-203ENST00000494546 OSBP2Q969R2 916 aa39.92■■■■□ 3.98
CBX4-203ENST00000494546 EMILIN3Q9NT22 766 aa39.92■■■■□ 3.98
CBX4-203ENST00000494546 SWAP70Q9UH65 585 aa39.92■■■■□ 3.98
CBX4-203ENST00000494546 ZFYP08048 801 aaPredicted RBP39.91■■■■□ 3.98
CBX4-203ENST00000494546 FAM110CQ1W6H9 321 aa39.91■■■■□ 3.98
CBX4-203ENST00000494546 C12orf60Q5U649 245 aa39.91■■■■□ 3.98
CBX4-203ENST00000494546 SH3TC2Q8TF17 1288 aa39.91■■■■□ 3.98
CBX4-203ENST00000494546 ZNF333Q96JL9 665 aa39.91■■■■□ 3.98
CBX4-203ENST00000494546 STRBPQ96SI9 672 aaKnown RBP39.91■■■■□ 3.98
CBX4-203ENST00000494546 HOXA7P31268 230 aaPredicted RBP39.9■■■■□ 3.98
CBX4-203ENST00000494546 RAET1EQ8TD07 263 aa39.9■■■■□ 3.98
CBX4-203ENST00000494546 BAZ2AQ9UIF9 1905 aaKnown RBP39.89■■■■□ 3.98
CBX4-203ENST00000494546 GUCY1A2P33402 732 aa39.89■■■■□ 3.98
CBX4-203ENST00000494546 PRKCZQ05513 592 aa39.89■■■■□ 3.98
CBX4-203ENST00000494546 SEPT2Q15019 361 aa39.89■■■■□ 3.98
CBX4-203ENST00000494546 LRRFIP1Q32MZ4 808 aaKnown RBP39.89■■■■□ 3.98
CBX4-203ENST00000494546 ACER1Q8TDN7 264 aa39.89■■■■□ 3.98
CBX4-203ENST00000494546 SUPT16HQ9Y5B9 1047 aaKnown RBP39.89■■■■□ 3.98
CBX4-203ENST00000494546 SALL3Q9BXA9 1300 aa39.89■■■■□ 3.98
CBX4-203ENST00000494546 SMIM22K7EJ46 135 aa39.88■■■■□ 3.97
CBX4-203ENST00000494546 TNPO2O14787 897 aaKnown RBP39.88■■■■□ 3.97
CBX4-203ENST00000494546 FSD1Q9BTV5 496 aa39.88■■■■□ 3.97
CBX4-203ENST00000494546 POTEFA5A3E0 1075 aa39.87■■■■□ 3.97
CBX4-203ENST00000494546 MYCP01106 439 aaPredicted RBP39.87■■■■□ 3.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms