RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 HDAC5Q9UQL6 1122 aa17.63■□□□□ 0.41
PRPF40A-211ENST00000493468 RLFQ13129 1914 aa17.62■□□□□ 0.41
PRPF40A-211ENST00000493468 GPR142Q7Z601 462 aa17.62■□□□□ 0.41
PRPF40A-211ENST00000493468 XAGE2Q96GT9 111 aa17.62■□□□□ 0.41
PRPF40A-211ENST00000493468 LBHD1Q9BQE6 289 aaPredicted RBP17.62■□□□□ 0.41
PRPF40A-211ENST00000493468 DHX36Q9H2U1 1008 aaKnown RBP17.62■□□□□ 0.41
PRPF40A-211ENST00000493468 PI4KBQ9UBF8 816 aa17.62■□□□□ 0.41
PRPF40A-211ENST00000493468 RBPJLQ9UBG7 517 aa17.62■□□□□ 0.41
PRPF40A-211ENST00000493468 PA2G4Q9UQ80 394 aaKnown RBP17.62■□□□□ 0.41
PRPF40A-211ENST00000493468 AKAP2Q9Y2D5 859 aa17.62■□□□□ 0.41
PRPF40A-211ENST00000493468 PRUNE2Q8WUY3 3088 aa17.62■□□□□ 0.41
PRPF40A-211ENST00000493468 A0A1B0GUL7 405 aa17.61■□□□□ 0.41
PRPF40A-211ENST00000493468 TIMM10P62072 90 aa17.61■□□□□ 0.41
PRPF40A-211ENST00000493468 CCL14Q16627 93 aa17.61■□□□□ 0.41
PRPF40A-211ENST00000493468 ALDH1L2Q3SY69 923 aa17.61■□□□□ 0.41
PRPF40A-211ENST00000493468 PLEKHH3Q7Z736 793 aa17.61■□□□□ 0.41
PRPF40A-211ENST00000493468 METTL16Q86W50 562 aaKnown RBP17.61■□□□□ 0.41
PRPF40A-211ENST00000493468 PORCNQ9H237 461 aa17.61■□□□□ 0.41
PRPF40A-211ENST00000493468 CDH23Q9H251 3354 aa17.6■□□□□ 0.41
PRPF40A-211ENST00000493468 USP17L10C9JJH3 530 aa17.6■□□□□ 0.41
PRPF40A-211ENST00000493468 MSCO60682 206 aa17.6■□□□□ 0.41
PRPF40A-211ENST00000493468 CCAR1Q8IX12 1150 aaKnown RBP17.6■□□□□ 0.41
PRPF40A-211ENST00000493468 TEX11Q8IYF3 940 aa17.6■□□□□ 0.41
PRPF40A-211ENST00000493468 HMG20BQ9P0W2 317 aa17.6■□□□□ 0.41
PRPF40A-211ENST00000493468 TTC28Q96AY4 2481 aa17.59■□□□□ 0.41
PRPF40A-211ENST00000493468 PEX10O60683 326 aa17.59■□□□□ 0.41
PRPF40A-211ENST00000493468 MAP2K5Q13163 448 aa17.59■□□□□ 0.41
PRPF40A-211ENST00000493468 Q3C1V9 767 aa17.59■□□□□ 0.41
PRPF40A-211ENST00000493468 SPATA5Q8NB90 893 aa17.59■□□□□ 0.41
PRPF40A-211ENST00000493468 FAM161BQ96MY7 647 aa17.59■□□□□ 0.41
PRPF40A-211ENST00000493468 GLRX3O76003 335 aaKnown RBP17.58■□□□□ 0.4
PRPF40A-211ENST00000493468 MFSD14CQ5VZR4 134 aa17.58■□□□□ 0.4
PRPF40A-211ENST00000493468 LPAR1Q92633 364 aa17.58■□□□□ 0.4
PRPF40A-211ENST00000493468 SENP6Q9GZR1 1112 aaPredicted RBP17.58■□□□□ 0.4
PRPF40A-211ENST00000493468 DNAJC18Q9H819 358 aa17.58■□□□□ 0.4
PRPF40A-211ENST00000493468 PRDM6Q9NQX0 595 aa17.58■□□□□ 0.4
PRPF40A-211ENST00000493468 PRKAG2Q9UGJ0 569 aa17.58■□□□□ 0.4
PRPF40A-211ENST00000493468 ZNF236Q9UL36 1845 aa17.58■□□□□ 0.4
PRPF40A-211ENST00000493468 E9PSI1 815 aa17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 DNM1LO00429 736 aa17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 ARID4AP29374 1257 aaPredicted RBP17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 JAG1P78504 1218 aa17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 POTEEQ6S8J3 1075 aa17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 FOXP4Q8IVH2 680 aaPredicted RBP17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 MAFAQ8NHW3 353 aaPredicted RBP17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 SH3RF3Q8TEJ3 882 aaPredicted RBP17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 CDX2Q99626 313 aaPredicted RBP17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 DDX20Q9UHI6 824 aaKnown RBP17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 ZBTB21Q9ULJ3 1066 aa17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 RABGAP1Q9Y3P9 1069 aa17.57■□□□□ 0.4
PRPF40A-211ENST00000493468 HOXC6P09630 235 aa17.56■□□□□ 0.4
PRPF40A-211ENST00000493468 PLCG2P16885 1265 aa17.56■□□□□ 0.4
PRPF40A-211ENST00000493468 CCNA1P78396 465 aa17.56■□□□□ 0.4
PRPF40A-211ENST00000493468 TFCP2Q12800 502 aa17.56■□□□□ 0.4
PRPF40A-211ENST00000493468 PI16Q6UXB8 463 aa17.56■□□□□ 0.4
PRPF40A-211ENST00000493468 EDC3Q96F86 508 aaKnown RBP17.56■□□□□ 0.4
PRPF40A-211ENST00000493468 C12orf42Q96LP6 360 aa17.56■□□□□ 0.4
PRPF40A-211ENST00000493468 NOL10Q9BSC4 688 aaKnown RBP17.56■□□□□ 0.4
PRPF40A-211ENST00000493468 PAGR1Q9BTK6 254 aa17.56■□□□□ 0.4
PRPF40A-211ENST00000493468 RAI14Q9P0K7 980 aa17.56■□□□□ 0.4
PRPF40A-211ENST00000493468 SLC15A5A6NIM6 579 aa17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 BAG3O95817 575 aa17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 RTP1P59025 263 aa17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 MTX1Q13505 466 aa17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 USP17L2Q6R6M4 530 aa17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 TBC1D9Q6ZT07 1266 aa17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 SEMA6BQ9H3T3 888 aa17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 CWC22Q9HCG8 908 aaKnown RBP17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 EMILIN3Q9NT22 766 aa17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 SMC4Q9NTJ3 1288 aa17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 FLRT1Q9NZU1 646 aa17.55■□□□□ 0.4
PRPF40A-211ENST00000493468 MUC3AQ02505 3323 aa17.54■□□□□ 0.4
PRPF40A-211ENST00000493468 FLT1P17948 1338 aa17.54■□□□□ 0.4
PRPF40A-211ENST00000493468 ANP32CO43423 234 aa17.54■□□□□ 0.4
PRPF40A-211ENST00000493468 CNMDO75829 334 aa17.54■□□□□ 0.4
PRPF40A-211ENST00000493468 IGHA2P01877 340 aa17.54■□□□□ 0.4
PRPF40A-211ENST00000493468 PPP4CP60510 307 aa17.54■□□□□ 0.4
PRPF40A-211ENST00000493468 SMAD3P84022 425 aaKnown RBP17.54■□□□□ 0.4
PRPF40A-211ENST00000493468 LBX2Q6XYB7 198 aa17.54■□□□□ 0.4
PRPF40A-211ENST00000493468 MYH1P12882 1939 aa17.54■□□□□ 0.4
PRPF40A-211ENST00000493468 MYO5AQ9Y4I1 1855 aaKnown RBP17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 IGSF3O75054 1194 aa17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 GDF11O95390 407 aa17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 PTPREP23469 700 aa17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 MCAMP43121 646 aa17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 ATN1P54259 1190 aaPredicted RBP17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 GRB14Q14449 540 aa17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 SHHQ15465 462 aa17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 CRACR2BQ8N4Y2 399 aaPredicted RBP17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 SYMPKQ92797 1274 aaKnown RBP17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 NEUROD6Q96NK8 337 aa17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 TRIM34Q9BYJ4 488 aa17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 LRP2BPQ9P2M1 347 aa17.53■□□□□ 0.4
PRPF40A-211ENST00000493468 TMEM265A0A087WTH1 108 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 USP17L15C9J2P7 530 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 USP17L13C9JLJ4 530 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 USP17L11C9JVI0 530 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 USP17L18D6R9N7 530 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 USP17L22D6RA61 530 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 USP17L17D6RBQ6 530 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms