RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 WASHC2CQ9Y4E1 1318 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 A0A1W2PQU0 124 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 CDC14CA4D256 554 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 C2CD2LO14523 706 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 RFPL3O75679 317 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 ARL4DP49703 201 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 ETF1P62495 437 aaKnown RBP6.26□□□□□ -1.41
VPS13A-212ENST00000493341 C19orf57Q0VDD7 668 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 TTF1Q15361 905 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-212ENST00000493341 PKDCCQ504Y2 493 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 NUDT8Q8WV74 236 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 KISS1RQ969F8 398 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-212ENST00000493341 WDR89Q96FK6 387 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-212ENST00000493341 TARS2Q9BW92 718 aaKnown RBP6.26□□□□□ -1.41
VPS13A-212ENST00000493341 PLD2O14939 933 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 TP53P04637 393 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-212ENST00000493341 LIG1P18858 919 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 PMLP29590 882 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 GRK4P32298 578 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 GUCY2FP51841 1108 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 AKAP4Q5JQC9 854 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 LRRTM3Q86VH5 581 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 IL22RA1Q8N6P7 574 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 MORC4Q8TE76 937 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 PMM1Q92871 262 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 SOX17Q9H6I2 414 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-212ENST00000493341 ARHGEF4Q9NR80 690 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 KRT82Q9NSB4 513 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 MAPRE3Q9UPY8 281 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 GSG1L2A8MUP6 293 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 LINC01387J3KSC0 135 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 RGS9O75916 674 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-212ENST00000493341 RGS20O76081 388 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 ARAFP10398 606 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 TMEM201Q5SNT2 666 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 PHACTR4Q8IZ21 702 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 C8orf48Q96LL4 319 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 ATP13A2Q9NQ11 1180 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 FRRS1LQ9P0K9 344 aa6.25□□□□□ -1.41
VPS13A-212ENST00000493341 TRBV23-1A0A0A0MS06 115 aa6.24□□□□□ -1.41
VPS13A-212ENST00000493341 TRAV20A0A0B4J274 112 aa6.24□□□□□ -1.41
VPS13A-212ENST00000493341 ZNF862O60290 1169 aa6.24□□□□□ -1.41
VPS13A-212ENST00000493341 HSP90AA2PQ14568 343 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-212ENST00000493341 BBS9Q3SYG4 887 aa6.24□□□□□ -1.41
VPS13A-212ENST00000493341 FNDC3BQ53EP0 1204 aaKnown RBP6.24□□□□□ -1.41
VPS13A-212ENST00000493341 TDRD10Q5VZ19 366 aaKnown RBP6.24□□□□□ -1.41
VPS13A-212ENST00000493341 FAM117BQ6P1L5 589 aa6.24□□□□□ -1.41
VPS13A-212ENST00000493341 CYFIP1Q7L576 1253 aa6.24□□□□□ -1.41
VPS13A-212ENST00000493341 LEO1Q8WVC0 666 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-212ENST00000493341 ACSF2Q96CM8 615 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-212ENST00000493341 PICK1Q9NRD5 415 aa6.24□□□□□ -1.41
VPS13A-212ENST00000493341 GEMIN8Q9NWZ8 242 aaKnown RBP6.24□□□□□ -1.41
VPS13A-212ENST00000493341 KATNA1O75449 491 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 SDSP20132 328 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 EPHB1P54762 984 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 PPP2R2AP63151 447 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 PIP4K2BP78356 416 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 HNRNPUQ00839 825 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS13A-212ENST00000493341 DDX46Q7L014 1031 aaKnown RBP6.23□□□□□ -1.41
VPS13A-212ENST00000493341 AFAP1L2Q8N4X5 818 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 LRRN4CLQ8ND94 238 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 FAM13CQ8NE31 585 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 DHRS1Q96LJ7 313 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 SLC6A18Q96N87 628 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 ANKRD34BA5PLL1 514 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 EPHX1P07099 455 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 CTSBP07858 339 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 STRN3Q13033 797 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 PPP2R5AQ15172 486 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 NFE2Q16621 373 aaPredicted RBP6.23□□□□□ -1.41
VPS13A-212ENST00000493341 STRA8Q7Z7C7 330 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 SCUBE1Q8IWY4 988 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 APBA2Q99767 749 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 AARSD1Q9BTE6 412 aaKnown RBP6.23□□□□□ -1.41
VPS13A-212ENST00000493341 CARD10Q9BWT7 1032 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 LGR4Q9BXB1 951 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 NRSN2Q9GZP1 204 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 KLF15Q9UIH9 416 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 ADAM30Q9UKF2 790 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 TACC3Q9Y6A5 838 aa6.23□□□□□ -1.41
VPS13A-212ENST00000493341 EIF4EBP3O60516 100 aaPredicted RBP6.22□□□□□ -1.41
VPS13A-212ENST00000493341 CPEP16870 476 aa6.22□□□□□ -1.41
VPS13A-212ENST00000493341 ADH6P28332 368 aa6.22□□□□□ -1.41
VPS13A-212ENST00000493341 YARSP54577 528 aaKnown RBP6.22□□□□□ -1.41
VPS13A-212ENST00000493341 HEATR6Q6AI08 1181 aaKnown RBP6.22□□□□□ -1.41
VPS13A-212ENST00000493341 CACTIN-AS1Q8N1I8 211 aa6.22□□□□□ -1.41
VPS13A-212ENST00000493341 USP26Q9BXU7 913 aa6.22□□□□□ -1.41
VPS13A-212ENST00000493341 DACH1Q9UI36 760 aa6.22□□□□□ -1.41
VPS13A-212ENST00000493341 DNAJC25-GNG10A0A024R161 153 aa6.21□□□□□ -1.41
VPS13A-212ENST00000493341 ADARB2-AS1A8MUL3 147 aa6.21□□□□□ -1.41
VPS13A-212ENST00000493341 NAT2P11245 290 aa6.21□□□□□ -1.41
VPS13A-212ENST00000493341 PMS1P54277 932 aaKnown RBP6.21□□□□□ -1.41
VPS13A-212ENST00000493341 BIRC2Q13490 618 aa6.21□□□□□ -1.41
VPS13A-212ENST00000493341 LRRC41Q15345 812 aa6.21□□□□□ -1.41
VPS13A-212ENST00000493341 PPM1JQ5JR12 505 aa6.21□□□□□ -1.41
VPS13A-212ENST00000493341 ADAT2Q7Z6V5 191 aaKnown RBP6.21□□□□□ -1.41
VPS13A-212ENST00000493341 TMEM192Q8IY95 271 aa6.21□□□□□ -1.41
VPS13A-212ENST00000493341 FGD4Q96M96 766 aa6.21□□□□□ -1.41
VPS13A-212ENST00000493341 SMAD5Q99717 465 aaKnown RBP6.21□□□□□ -1.41
VPS13A-212ENST00000493341 HAUS7Q99871 368 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms