RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 SNRKQ9NRH2 765 aa11.15□□□□□ -0.62
HDAC3-212ENST00000492407 GJD2Q9UKL4 321 aa11.15□□□□□ -0.62
HDAC3-212ENST00000492407 TNNQ9UQP3 1299 aa11.15□□□□□ -0.62
HDAC3-212ENST00000492407 RPTORQ8N122 1335 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 ECM2O94769 699 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-212ENST00000492407 MS4A1P11836 297 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 ELNP15502 786 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 MAPK4P31152 587 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 ZAP70P43403 619 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 IRX3P78415 501 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-212ENST00000492407 TPRNQ4KMQ1 711 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 TATDN1Q6P1N9 297 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 CCDC84Q86UT8 332 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-212ENST00000492407 MAPKAPK5Q8IW41 473 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 GPRC5AQ8NFJ5 357 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 PRO3102Q9H379 93 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-212ENST00000492407 DBNLQ9UJU6 430 aaKnown RBP11.14□□□□□ -0.63
HDAC3-212ENST00000492407 ZSWIM8A7E2V4 1837 aa11.14□□□□□ -0.63
HDAC3-212ENST00000492407 MAP3K12Q12852 859 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 MTMR2Q13614 643 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 USP17L2Q6R6M4 530 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 CHRDL2Q6WN34 429 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 NECAB2Q7Z6G3 386 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 ADGRA1Q86SQ6 560 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 TTC6Q86TZ1 520 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 SOCS4Q8WXH5 440 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 EAF2Q96CJ1 260 aaPredicted RBP11.13□□□□□ -0.63
HDAC3-212ENST00000492407 C12orf42Q96LP6 360 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 DEFB118Q96PH6 123 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 P2RX7Q99572 595 aaKnown RBP11.13□□□□□ -0.63
HDAC3-212ENST00000492407 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.13□□□□□ -0.63
HDAC3-212ENST00000492407 DNAJC18Q9H819 358 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 HMX1Q9NP08 348 aaPredicted RBP11.13□□□□□ -0.63
HDAC3-212ENST00000492407 PIH1D3Q9NQM4 214 aaKnown RBP11.13□□□□□ -0.63
HDAC3-212ENST00000492407 ZBTB21Q9ULJ3 1066 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 PHIPQ8WWQ0 1821 aa11.13□□□□□ -0.63
HDAC3-212ENST00000492407 EVI5O60447 810 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 CYP7A1P22680 504 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 USP14P54578 494 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 HERVK_113P62684 666 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 TTF1Q15361 905 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-212ENST00000492407 MAP3K21Q5TCX8 1036 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 ITPRIPQ8IWB1 547 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.12□□□□□ -0.63
HDAC3-212ENST00000492407 NUDT12Q9BQG2 462 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 RBPJLQ9UBG7 517 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 SERPINB13Q9UIV8 391 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 PALD1Q9ULE6 856 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 LOC285556D6RIA3 1793 aa11.12□□□□□ -0.63
HDAC3-212ENST00000492407 IDH1O75874 414 aaKnown RBP11.11□□□□□ -0.63
HDAC3-212ENST00000492407 GLRX3O76003 335 aaKnown RBP11.11□□□□□ -0.63
HDAC3-212ENST00000492407 USP5P45974 858 aa11.11□□□□□ -0.63
HDAC3-212ENST00000492407 JAG1P78504 1218 aa11.11□□□□□ -0.63
HDAC3-212ENST00000492407 PDE3AQ14432 1141 aa11.11□□□□□ -0.63
HDAC3-212ENST00000492407 CEP85Q6P2H3 762 aa11.11□□□□□ -0.63
HDAC3-212ENST00000492407 LBX2Q6XYB7 198 aa11.11□□□□□ -0.63
HDAC3-212ENST00000492407 NBPF3Q9H094 633 aa11.11□□□□□ -0.63
HDAC3-212ENST00000492407 CCDC8Q9H0W5 538 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-212ENST00000492407 CHMP4BQ9H444 224 aaKnown RBP11.11□□□□□ -0.63
HDAC3-212ENST00000492407 RBM27Q9P2N5 1060 aaKnown RBP11.11□□□□□ -0.63
HDAC3-212ENST00000492407 RABGAP1Q9Y3P9 1069 aa11.11□□□□□ -0.63
HDAC3-212ENST00000492407 PTPRFP10586 1907 aa11.11□□□□□ -0.63
HDAC3-212ENST00000492407 MGAMO43451 1857 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 USP17L15C9J2P7 530 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 USP17L13C9JLJ4 530 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 USP17L11C9JVI0 530 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 USP17L18D6R9N7 530 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 USP17L22D6RA61 530 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 USP17L17D6RBQ6 530 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 USP17L19D6RCP7 530 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 USP17L20D6RJB6 530 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 RLBP1P12271 317 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 BMP8BP34820 402 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 CCNA1P78396 465 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 HNRNPUQ00839 825 aaKnown RBP eCLIP11.1□□□□□ -0.63
HDAC3-212ENST00000492407 USP17L24Q0WX57 530 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 RPAP2Q8IXW5 612 aaPredicted RBP11.1□□□□□ -0.63
HDAC3-212ENST00000492407 MAGEB6Q8N7X4 407 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 USP6NLQ92738 828 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 PAWRQ96IZ0 340 aaKnown RBP11.1□□□□□ -0.63
HDAC3-212ENST00000492407 KIAA1683Q9H0B3 1180 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 CABP5Q9NP86 173 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 EMILIN3Q9NT22 766 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 TLR7Q9NYK1 1049 aaKnown RBP11.1□□□□□ -0.63
HDAC3-212ENST00000492407 OGDHLQ9ULD0 1010 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 MAST2Q6P0Q8 1798 aa11.1□□□□□ -0.63
HDAC3-212ENST00000492407 GDF11O95390 407 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 GH2P01242 217 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 RGS2P41220 211 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 ERVK-9P63128 1117 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 ERVK-24P63145 666 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 DYNLL1P63167 89 aaKnown RBP11.09□□□□□ -0.63
HDAC3-212ENST00000492407 CERKLQ49MI3 558 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-212ENST00000492407 MORN1Q5T089 497 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 PLEKHH3Q7Z736 793 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 CCAR1Q8IX12 1150 aaKnown RBP11.09□□□□□ -0.63
HDAC3-212ENST00000492407 CLASRPQ8N2M8 674 aaKnown RBP11.09□□□□□ -0.63
HDAC3-212ENST00000492407 TRIB2Q92519 343 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 RIOK1Q9BRS2 568 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms