RNA–Protein interactions for RNA: ENST00000490360.1

UPK3B-205, Transcript of uroplakin 3B, humanhuman

TSL 2

Gene UPK3B, Length 524 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3B-205ENST00000490360 IGSF3O75054 1194 aa24.26■■□□□ 1.47
UPK3B-205ENST00000490360 ARID4AP29374 1257 aaPredicted RBP24.26■■□□□ 1.47
UPK3B-205ENST00000490360 RGS2P41220 211 aa24.26■■□□□ 1.47
UPK3B-205ENST00000490360 RRP1BQ14684 758 aaKnown RBP24.26■■□□□ 1.47
UPK3B-205ENST00000490360 LRP2BPQ9P2M1 347 aa24.26■■□□□ 1.47
UPK3B-205ENST00000490360 USP17L10C9JJH3 530 aa24.25■■□□□ 1.47
UPK3B-205ENST00000490360 UQCRFS1P1P0C7P4 283 aa24.25■■□□□ 1.47
UPK3B-205ENST00000490360 CACNB2Q08289 660 aaPredicted RBP24.25■■□□□ 1.47
UPK3B-205ENST00000490360 METTL16Q86W50 562 aaKnown RBP24.25■■□□□ 1.47
UPK3B-205ENST00000490360 USP6NLQ92738 828 aa24.25■■□□□ 1.47
UPK3B-205ENST00000490360 MEIS3Q99687 375 aa24.25■■□□□ 1.47
UPK3B-205ENST00000490360 TRIM34Q9BYJ4 488 aa24.25■■□□□ 1.47
UPK3B-205ENST00000490360 ERVK-9P63128 1117 aa24.24■■□□□ 1.47
UPK3B-205ENST00000490360 ERVK-24P63145 666 aa24.24■■□□□ 1.47
UPK3B-205ENST00000490360 FAM109BQ6ICB4 259 aaPredicted RBP24.24■■□□□ 1.47
UPK3B-205ENST00000490360 TBC1D9Q6ZT07 1266 aa24.24■■□□□ 1.47
UPK3B-205ENST00000490360 UNC80Q8N2C7 3258 aa24.23■■□□□ 1.47
UPK3B-205ENST00000490360 GLRX3O76003 335 aaKnown RBP24.23■■□□□ 1.47
UPK3B-205ENST00000490360 CRACR2BQ8N4Y2 399 aaPredicted RBP24.23■■□□□ 1.47
UPK3B-205ENST00000490360 SH3RF3Q8TEJ3 882 aaPredicted RBP24.23■■□□□ 1.47
UPK3B-205ENST00000490360 APBA2Q99767 749 aa24.23■■□□□ 1.47
UPK3B-205ENST00000490360 TXNRD2Q9NNW7 524 aa24.23■■□□□ 1.47
UPK3B-205ENST00000490360 RBPJLQ9UBG7 517 aa24.23■■□□□ 1.47
UPK3B-205ENST00000490360 PPP4CP60510 307 aa24.22■■□□□ 1.47
UPK3B-205ENST00000490360 MORN1Q5T089 497 aa24.22■■□□□ 1.47
UPK3B-205ENST00000490360 LHX8Q68G74 356 aa24.22■■□□□ 1.47
UPK3B-205ENST00000490360 NAA16Q6N069 864 aaPredicted RBP24.22■■□□□ 1.47
UPK3B-205ENST00000490360 PI16Q6UXB8 463 aa24.22■■□□□ 1.47
UPK3B-205ENST00000490360 ATF7IPQ6VMQ6 1270 aa24.22■■□□□ 1.47
UPK3B-205ENST00000490360 GPR142Q7Z601 462 aa24.22■■□□□ 1.47
UPK3B-205ENST00000490360 PLEKHH3Q7Z736 793 aa24.22■■□□□ 1.47
UPK3B-205ENST00000490360 ARHGAP45Q92619 1136 aa24.22■■□□□ 1.47
UPK3B-205ENST00000490360 DNAH12Q6ZR08 3092 aa24.21■■□□□ 1.47
UPK3B-205ENST00000490360 CCNA1P78396 465 aa24.21■■□□□ 1.47
UPK3B-205ENST00000490360 CWC22Q9HCG8 908 aaKnown RBP24.21■■□□□ 1.47
UPK3B-205ENST00000490360 SIPA1L1O43166 1804 aa24.2■■□□□ 1.46
UPK3B-205ENST00000490360 MCAMP43121 646 aa24.2■■□□□ 1.46
UPK3B-205ENST00000490360 LRRC26Q2I0M4 334 aa24.2■■□□□ 1.46
UPK3B-205ENST00000490360 USP17L2Q6R6M4 530 aa24.2■■□□□ 1.46
UPK3B-205ENST00000490360 TRMT2AQ8IZ69 625 aaKnown RBP24.2■■□□□ 1.46
UPK3B-205ENST00000490360 LBHD1Q9BQE6 289 aaPredicted RBP24.2■■□□□ 1.46
UPK3B-205ENST00000490360 AATFQ9NY61 560 aaKnown RBP eCLIP24.2■■□□□ 1.46
UPK3B-205ENST00000490360 LAMA2P24043 3122 aaKnown RBP24.19■■□□□ 1.46
UPK3B-205ENST00000490360 MSCO60682 206 aa24.19■■□□□ 1.46
UPK3B-205ENST00000490360 G3BP1Q13283 466 aaKnown RBP eCLIP24.19■■□□□ 1.46
UPK3B-205ENST00000490360 MFSD14CQ5VZR4 134 aa24.19■■□□□ 1.46
UPK3B-205ENST00000490360 TGFBRAP1Q8WUH2 860 aa24.19■■□□□ 1.46
UPK3B-205ENST00000490360 PORCNQ9H237 461 aa24.19■■□□□ 1.46
UPK3B-205ENST00000490360 ZBTB21Q9ULJ3 1066 aa24.19■■□□□ 1.46
UPK3B-205ENST00000490360 RABGAP1Q9Y3P9 1069 aa24.19■■□□□ 1.46
UPK3B-205ENST00000490360 FLT1P17948 1338 aa24.18■■□□□ 1.46
UPK3B-205ENST00000490360 POTEB2H3BUK9 544 aa24.18■■□□□ 1.46
UPK3B-205ENST00000490360 HLA-DOAP06340 250 aa24.18■■□□□ 1.46
UPK3B-205ENST00000490360 CCND3P30281 292 aaPredicted RBP24.18■■□□□ 1.46
UPK3B-205ENST00000490360 MAP2K5Q13163 448 aa24.18■■□□□ 1.46
UPK3B-205ENST00000490360 Q3C1V9 767 aa24.18■■□□□ 1.46
UPK3B-205ENST00000490360 PAGR1Q9BTK6 254 aa24.18■■□□□ 1.46
UPK3B-205ENST00000490360 FOCADQ5VW36 1801 aa24.18■■□□□ 1.46
UPK3B-205ENST00000490360 MAST2Q6P0Q8 1798 aa24.18■■□□□ 1.46
UPK3B-205ENST00000490360 MDM2Q00987 491 aaPredicted RBP24.17■■□□□ 1.46
UPK3B-205ENST00000490360 EDC3Q96F86 508 aaKnown RBP24.17■■□□□ 1.46
UPK3B-205ENST00000490360 DNAJC18Q9H819 358 aa24.17■■□□□ 1.46
UPK3B-205ENST00000490360 CDK5RAP2Q96SN8 1893 aa24.16■■□□□ 1.46
UPK3B-205ENST00000490360 ZNF316A6NFI3 1004 aaPredicted RBP24.16■■□□□ 1.46
UPK3B-205ENST00000490360 CCL14Q16627 93 aa24.16■■□□□ 1.46
UPK3B-205ENST00000490360 CERS3Q8IU89 383 aa24.16■■□□□ 1.46
UPK3B-205ENST00000490360 MAPKAPK5Q8IW41 473 aa24.16■■□□□ 1.46
UPK3B-205ENST00000490360 PHF6Q8IWS0 365 aaKnown RBP eCLIP24.16■■□□□ 1.46
UPK3B-205ENST00000490360 CDCA7LQ96GN5 454 aa24.16■■□□□ 1.46
UPK3B-205ENST00000490360 C12orf42Q96LP6 360 aa24.16■■□□□ 1.46
UPK3B-205ENST00000490360 EMILIN3Q9NT22 766 aa24.16■■□□□ 1.46
UPK3B-205ENST00000490360 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.16■■□□□ 1.46
UPK3B-205ENST00000490360 FRMPD3Q5JV73 1810 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 USP17L15C9J2P7 530 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 USP17L13C9JLJ4 530 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 USP17L11C9JVI0 530 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 USP17L18D6R9N7 530 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 USP17L22D6RA61 530 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 USP17L17D6RBQ6 530 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 USP17L19D6RCP7 530 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 USP17L20D6RJB6 530 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 JAG1P78504 1218 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 USP17L24Q0WX57 530 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 CCDC158Q5M9N0 1113 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 GPR108Q9NPR9 543 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 PRKAG2Q9UGJ0 569 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 PALD1Q9ULE6 856 aa24.15■■□□□ 1.46
UPK3B-205ENST00000490360 SLC15A5A6NIM6 579 aa24.14■■□□□ 1.45
UPK3B-205ENST00000490360 PEX10O60683 326 aa24.14■■□□□ 1.45
UPK3B-205ENST00000490360 GDF11O95390 407 aa24.14■■□□□ 1.45
UPK3B-205ENST00000490360 GNAI2P04899 355 aa24.14■■□□□ 1.45
UPK3B-205ENST00000490360 USP14P54578 494 aa24.14■■□□□ 1.45
UPK3B-205ENST00000490360 LPAR1Q92633 364 aa24.14■■□□□ 1.45
UPK3B-205ENST00000490360 COL25A1Q9BXS0 654 aaPredicted RBP24.14■■□□□ 1.45
UPK3B-205ENST00000490360 SENP6Q9GZR1 1112 aaPredicted RBP24.14■■□□□ 1.45
UPK3B-205ENST00000490360 HOXC6P09630 235 aa24.13■■□□□ 1.45
UPK3B-205ENST00000490360 TTC39AQ5SRH9 613 aa24.13■■□□□ 1.45
UPK3B-205ENST00000490360 FEZ1Q99689 392 aa24.13■■□□□ 1.45
UPK3B-205ENST00000490360 DDX20Q9UHI6 824 aaKnown RBP24.13■■□□□ 1.45
UPK3B-205ENST00000490360 IVNS1ABPQ9Y6Y0 642 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms