RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 MAP2K2P36507 400 aa12.94□□□□□ -0.34
VPS13D-210ENST00000489961 CDK8P49336 464 aa12.94□□□□□ -0.34
VPS13D-210ENST00000489961 PPATQ06203 517 aa12.94□□□□□ -0.34
VPS13D-210ENST00000489961 PDE4BQ07343 736 aa12.94□□□□□ -0.34
VPS13D-210ENST00000489961 STK11IPQ8N1F8 1099 aa12.94□□□□□ -0.34
VPS13D-210ENST00000489961 SLC44A5Q8NCS7 719 aa12.94□□□□□ -0.34
VPS13D-210ENST00000489961 MKNK2Q9HBH9 465 aa12.94□□□□□ -0.34
VPS13D-210ENST00000489961 CABP5Q9NP86 173 aa12.94□□□□□ -0.34
VPS13D-210ENST00000489961 LAMA4Q16363 1823 aa12.94□□□□□ -0.34
VPS13D-210ENST00000489961 THSD7BQ9C0I4 1608 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 SMIM22K7EJ46 135 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 MPHOSPH10O00566 681 aaKnown RBP12.93□□□□□ -0.34
VPS13D-210ENST00000489961 AOC2O75106 756 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 PTPRAP18433 802 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 MKRN3Q13064 507 aaKnown RBP12.93□□□□□ -0.34
VPS13D-210ENST00000489961 PPIL2Q13356 520 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 RRP1BQ14684 758 aaKnown RBP12.93□□□□□ -0.34
VPS13D-210ENST00000489961 ABCB5Q2M3G0 1257 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 REM2Q8IYK8 340 aaPredicted RBP12.93□□□□□ -0.34
VPS13D-210ENST00000489961 CNKSR2Q8WXI2 1034 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 CCDC17Q96LX7 622 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 TBC1D2Q9BYX2 928 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 AS3MTQ9HBK9 375 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 ANAPC4Q9UJX5 808 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 ZBTB21Q9ULJ3 1066 aa12.93□□□□□ -0.34
VPS13D-210ENST00000489961 MANSC4A6NHS7 340 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-210ENST00000489961 USP17L5A8MUK1 530 aa12.92□□□□□ -0.34
VPS13D-210ENST00000489961 ZNF213O14771 459 aa12.92□□□□□ -0.34
VPS13D-210ENST00000489961 GH2P01242 217 aa12.92□□□□□ -0.34
VPS13D-210ENST00000489961 GJA5P36382 358 aa12.92□□□□□ -0.34
VPS13D-210ENST00000489961 KIF23Q02241 960 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-210ENST00000489961 CTDSPL2Q05D32 466 aa12.92□□□□□ -0.34
VPS13D-210ENST00000489961 IMMTQ16891 758 aaKnown RBP12.92□□□□□ -0.34
VPS13D-210ENST00000489961 ZNF444Q8N0Y2 327 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-210ENST00000489961 ANO2Q9NQ90 1003 aa12.92□□□□□ -0.34
VPS13D-210ENST00000489961 ZHX2Q9Y6X8 837 aa12.92□□□□□ -0.34
VPS13D-210ENST00000489961 U3KPZ7 1027 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-210ENST00000489961 PHIPQ8WWQ0 1821 aa12.92□□□□□ -0.34
VPS13D-210ENST00000489961 PCP11498 1178 aaKnown RBP12.91□□□□□ -0.34
VPS13D-210ENST00000489961 GTF2A2P52657 109 aa12.91□□□□□ -0.34
VPS13D-210ENST00000489961 HAND2P61296 217 aa12.91□□□□□ -0.34
VPS13D-210ENST00000489961 PTH1RQ03431 593 aa12.91□□□□□ -0.34
VPS13D-210ENST00000489961 SREBF2Q12772 1141 aa12.91□□□□□ -0.34
VPS13D-210ENST00000489961 RAB3GAP1Q15042 981 aa12.91□□□□□ -0.34
VPS13D-210ENST00000489961 TMEM179Q6ZVK1 233 aa12.91□□□□□ -0.34
VPS13D-210ENST00000489961 CXCL11O14625 94 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 IRF6O14896 467 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 PRDM1O75626 825 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 AKR1B1P15121 316 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 RASA1P20936 1047 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 INHBEP58166 350 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 JAG1P78504 1218 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 SNAPC2Q13487 334 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 SHROOM1Q2M3G4 852 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-210ENST00000489961 CCDC84Q86UT8 332 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-210ENST00000489961 ZNF280CQ8ND82 737 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 MAP4K1Q92918 833 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 WDR18Q9BV38 432 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 LSG1Q9H089 658 aaKnown RBP12.9□□□□□ -0.34
VPS13D-210ENST00000489961 RNF41Q9H4P4 317 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-210ENST00000489961 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-210ENST00000489961 KCNH4Q9UQ05 1017 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 AFG3L2Q9Y4W6 797 aa12.9□□□□□ -0.34
VPS13D-210ENST00000489961 TRIM75PA6NK02 468 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 ORC4O43929 436 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 CETPP11597 493 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 MAP2K1Q02750 393 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-210ENST00000489961 SPP2Q13103 211 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 SEPT2Q15019 361 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 AKNAD1Q5T1N1 836 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 MFSD6Q6ZSS7 791 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 JMYQ8N9B5 988 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 STAG1Q8WVM7 1258 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 ZIC5Q96T25 663 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 TOMM22Q9NS69 142 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.89□□□□□ -0.35
VPS13D-210ENST00000489961 RBM8AQ9Y5S9 174 aaKnown RBP12.89□□□□□ -0.35
VPS13D-210ENST00000489961 PTPRFP10586 1907 aa12.89□□□□□ -0.35
VPS13D-210ENST00000489961 GREB1LQ9C091 1923 aaPredicted RBP12.88□□□□□ -0.35
VPS13D-210ENST00000489961 CCL15-CCL14A0A0B4J2E2 113 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 TSPY2A6NKD2 308 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 USP17L10C9JJH3 530 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 REC8O95072 547 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 FGRP09769 529 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 TSPY3P0CV98 308 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 TSPY8P0CW00 308 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 GUCY1A2P33402 732 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 TM4SF4P48230 202 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 NT5C2P49902 561 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 CCL15Q16663 113 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 RRP12Q5JTH9 1297 aaKnown RBP12.88□□□□□ -0.35
VPS13D-210ENST00000489961 OTUD7BQ6GQQ9 843 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 MS4A4AQ96JQ5 239 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 FEZ1Q99689 392 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 BEGAINQ9BUH8 593 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 KANSL2Q9H9L4 492 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 ARHGEF10LQ9HCE6 1279 aa12.88□□□□□ -0.35
VPS13D-210ENST00000489961 A0A0G2JLL6 359 aaPredicted RBP12.87□□□□□ -0.35
VPS13D-210ENST00000489961 TESPA1A2RU30 521 aaPredicted RBP12.87□□□□□ -0.35
VPS13D-210ENST00000489961 C19orf81C9J6K1 198 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms