RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 GOLM1Q8NBJ4 401 aa8.36□□□□□ -1.07
PTPN4-212ENST00000488896 TMEM87BQ96K49 555 aa8.36□□□□□ -1.07
PTPN4-212ENST00000488896 HRASLS5Q96KN8 279 aa8.36□□□□□ -1.07
PTPN4-212ENST00000488896 MKNK2Q9HBH9 465 aa8.36□□□□□ -1.07
PTPN4-212ENST00000488896 CNTNAP4Q9C0A0 1308 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 TMEM265A0A087WTH1 108 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 IGF2BP3O00425 579 aaKnown RBP eCLIP8.35□□□□□ -1.07
PTPN4-212ENST00000488896 TLR3O15455 904 aaKnown RBP8.35□□□□□ -1.07
PTPN4-212ENST00000488896 GRIN3BO60391 1043 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 CILPO75339 1184 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 CBX7O95931 251 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 CD8BP10966 210 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 TAL1P17542 331 aaPredicted RBP8.35□□□□□ -1.07
PTPN4-212ENST00000488896 PLCG1P19174 1290 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 TRIM26Q12899 539 aaPredicted RBP8.35□□□□□ -1.07
PTPN4-212ENST00000488896 CDH24Q86UP0 819 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 CCDC84Q86UT8 332 aaPredicted RBP8.35□□□□□ -1.07
PTPN4-212ENST00000488896 AGBL5Q8NDL9 886 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 FBXO27Q8NI29 283 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 GATAD2BQ8WXI9 593 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 MISP3Q96FF7 219 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 ADGRE2Q9UHX3 823 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 GGT7Q9UJ14 662 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 TACC3Q9Y6A5 838 aa8.35□□□□□ -1.07
PTPN4-212ENST00000488896 FAM221AA4D161 298 aa8.34□□□□□ -1.07
PTPN4-212ENST00000488896 PRR33A8MZF0 331 aa8.34□□□□□ -1.07
PTPN4-212ENST00000488896 CAP2P40123 477 aa8.34□□□□□ -1.07
PTPN4-212ENST00000488896 PRKCQQ04759 706 aa8.34□□□□□ -1.07
PTPN4-212ENST00000488896 TMEM87AQ8NBN3 555 aa8.34□□□□□ -1.07
PTPN4-212ENST00000488896 ACSF2Q96CM8 615 aaPredicted RBP8.34□□□□□ -1.07
PTPN4-212ENST00000488896 VAV3Q9UKW4 847 aa8.34□□□□□ -1.07
PTPN4-212ENST00000488896 UPK3BL1B0FP48 263 aa8.33□□□□□ -1.08
PTPN4-212ENST00000488896 FAM155AB1AL88 458 aaPredicted RBP8.33□□□□□ -1.08
PTPN4-212ENST00000488896 UPK3BL2E5RIL1 263 aa8.33□□□□□ -1.08
PTPN4-212ENST00000488896 SFRP5Q5T4F7 317 aa8.33□□□□□ -1.08
PTPN4-212ENST00000488896 CDKAL1Q5VV42 579 aa8.33□□□□□ -1.08
PTPN4-212ENST00000488896 ERMP1Q7Z2K6 904 aa8.33□□□□□ -1.08
PTPN4-212ENST00000488896 WFDC3Q8IUB2 231 aa8.33□□□□□ -1.08
PTPN4-212ENST00000488896 SPACA3Q8IXA5 215 aa8.33□□□□□ -1.08
PTPN4-212ENST00000488896 MRPL41Q8IXM3 137 aaKnown RBP8.33□□□□□ -1.08
PTPN4-212ENST00000488896 MAPK8IP1Q9UQF2 711 aa8.33□□□□□ -1.08
PTPN4-212ENST00000488896 NKPD1Q17RQ9 610 aa8.32□□□□□ -1.08
PTPN4-212ENST00000488896 SLC6A19Q695T7 634 aa8.32□□□□□ -1.08
PTPN4-212ENST00000488896 HS2ST1Q7LGA3 356 aa8.32□□□□□ -1.08
PTPN4-212ENST00000488896 MCATQ8IVS2 390 aaKnown RBP8.32□□□□□ -1.08
PTPN4-212ENST00000488896 COL17A1Q9UMD9 1497 aaPredicted RBP8.32□□□□□ -1.08
PTPN4-212ENST00000488896 FBXL19Q6PCT2 694 aa8.31□□□□□ -1.08
PTPN4-212ENST00000488896 FAM13CQ8NE31 585 aa8.31□□□□□ -1.08
PTPN4-212ENST00000488896 TNKS2Q9H2K2 1166 aa8.31□□□□□ -1.08
PTPN4-212ENST00000488896 KLHL3Q9UH77 587 aa8.31□□□□□ -1.08
PTPN4-212ENST00000488896 ADAM30Q9UKF2 790 aa8.31□□□□□ -1.08
PTPN4-212ENST00000488896 POLR3KQ9Y2Y1 108 aaPredicted RBP8.31□□□□□ -1.08
PTPN4-212ENST00000488896 GARTP22102 1010 aa8.3□□□□□ -1.08
PTPN4-212ENST00000488896 EIF4A3P38919 411 aaKnown RBP8.3□□□□□ -1.08
PTPN4-212ENST00000488896 IKZF1Q13422 519 aa8.3□□□□□ -1.08
PTPN4-212ENST00000488896 ZNF792Q3KQV3 632 aa8.3□□□□□ -1.08
PTPN4-212ENST00000488896 MFSD4AQ8N468 514 aa8.3□□□□□ -1.08
PTPN4-212ENST00000488896 HSPA12BQ96MM6 686 aa8.3□□□□□ -1.08
PTPN4-212ENST00000488896 REV1Q9UBZ9 1251 aa8.3□□□□□ -1.08
PTPN4-212ENST00000488896 SNX11Q9Y5W9 270 aa8.3□□□□□ -1.08
PTPN4-212ENST00000488896 FUT4P22083 530 aa8.29□□□□□ -1.08
PTPN4-212ENST00000488896 MPP2Q14168 576 aa8.29□□□□□ -1.08
PTPN4-212ENST00000488896 ANGEL2Q5VTE6 544 aaKnown RBP8.29□□□□□ -1.08
PTPN4-212ENST00000488896 ZNF746Q6NUN9 644 aaPredicted RBP8.29□□□□□ -1.08
PTPN4-212ENST00000488896 FAM196AQ6ZSG2 479 aa8.29□□□□□ -1.08
PTPN4-212ENST00000488896 REC114Q7Z4M0 266 aa8.29□□□□□ -1.08
PTPN4-212ENST00000488896 PI4K2BQ8TCG2 481 aa8.29□□□□□ -1.08
PTPN4-212ENST00000488896 ASB11Q8WXH4 323 aa8.29□□□□□ -1.08
PTPN4-212ENST00000488896 PRDM7Q9NQW5 492 aa8.29□□□□□ -1.08
PTPN4-212ENST00000488896 SUPT16HQ9Y5B9 1047 aaKnown RBP8.29□□□□□ -1.08
PTPN4-212ENST00000488896 H3BS24 57 aa8.28□□□□□ -1.08
PTPN4-212ENST00000488896 HTR3BO95264 441 aa8.28□□□□□ -1.08
PTPN4-212ENST00000488896 CYP7A1P22680 504 aa8.28□□□□□ -1.08
PTPN4-212ENST00000488896 YARSP54577 528 aaKnown RBP8.28□□□□□ -1.08
PTPN4-212ENST00000488896 ZNF296Q8WUU4 475 aaPredicted RBP8.28□□□□□ -1.08
PTPN4-212ENST00000488896 BACH2Q9BYV9 841 aa8.28□□□□□ -1.08
PTPN4-212ENST00000488896 CHURC1-FNTBB4DL54 471 aa8.27□□□□□ -1.09
PTPN4-212ENST00000488896 CLCN7P51798 805 aa8.27□□□□□ -1.09
PTPN4-212ENST00000488896 CWF19L2Q2TBE0 894 aaKnown RBP8.27□□□□□ -1.09
PTPN4-212ENST00000488896 LDLRAD1Q5T700 205 aa8.27□□□□□ -1.09
PTPN4-212ENST00000488896 CBLL1Q75N03 491 aa8.27□□□□□ -1.09
PTPN4-212ENST00000488896 RC3H2Q9HBD1 1191 aaKnown RBP8.27□□□□□ -1.09
PTPN4-212ENST00000488896 BRMS1Q9HCU9 246 aa8.27□□□□□ -1.09
PTPN4-212ENST00000488896 ATP13A1Q9HD20 1204 aa8.27□□□□□ -1.09
PTPN4-212ENST00000488896 ADAMTS1Q9UHI8 967 aa8.27□□□□□ -1.09
PTPN4-212ENST00000488896 ADAMTS6Q9UKP5 1117 aa8.27□□□□□ -1.09
PTPN4-212ENST00000488896 CAPN6Q9Y6Q1 641 aa8.27□□□□□ -1.09
PTPN4-212ENST00000488896 RNASE1P07998 156 aaKnown RBP8.26□□□□□ -1.09
PTPN4-212ENST00000488896 ZNF865P0CJ78 1059 aaPredicted RBP8.26□□□□□ -1.09
PTPN4-212ENST00000488896 ETV3P41162 512 aa8.26□□□□□ -1.09
PTPN4-212ENST00000488896 TNNI2P48788 182 aa8.26□□□□□ -1.09
PTPN4-212ENST00000488896 ZP2Q05996 745 aa8.26□□□□□ -1.09
PTPN4-212ENST00000488896 TMEM201Q5SNT2 666 aa8.26□□□□□ -1.09
PTPN4-212ENST00000488896 DNAJB8Q8NHS0 232 aa8.26□□□□□ -1.09
PTPN4-212ENST00000488896 MBNL3Q9NUK0 354 aaKnown RBP8.26□□□□□ -1.09
PTPN4-212ENST00000488896 UBP1Q9NZI7 540 aa8.26□□□□□ -1.09
PTPN4-212ENST00000488896 CEP131Q9UPN4 1083 aa8.26□□□□□ -1.09
PTPN4-212ENST00000488896 PITPNM2Q9BZ72 1349 aa8.26□□□□□ -1.09
PTPN4-212ENST00000488896 RBM47A0AV96 593 aaKnown RBP8.25□□□□□ -1.09
PTPN4-212ENST00000488896 PAX4O43316 350 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms