RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 RLFQ13129 1914 aa8.03□□□□□ -1.12
PTCH1-211ENST00000488809 LAMA2P24043 3122 aaKnown RBP8.03□□□□□ -1.12
PTCH1-211ENST00000488809 MYH8P13535 1937 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L10C9JJH3 530 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 COL6A1P12109 1028 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 ERVK-9P63128 1117 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 ERVK-24P63145 666 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 MDM2Q00987 491 aaPredicted RBP8.02□□□□□ -1.13
PTCH1-211ENST00000488809 CACNB2Q08289 660 aaPredicted RBP8.02□□□□□ -1.13
PTCH1-211ENST00000488809 MFSD14CQ5VZR4 134 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 GPR142Q7Z601 462 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 PLEKHH3Q7Z736 793 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 FAM9BQ8IZU0 186 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 CRACR2BQ8N4Y2 399 aaPredicted RBP8.02□□□□□ -1.13
PTCH1-211ENST00000488809 XAGE2Q96GT9 111 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 SMC4Q9NTJ3 1288 aa8.02□□□□□ -1.13
PTCH1-211ENST00000488809 MYO5AQ9Y4I1 1855 aaKnown RBP8.02□□□□□ -1.13
PTCH1-211ENST00000488809 POTEB2H3BUK9 544 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 IGSF3O75054 1194 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 HLA-DOAP06340 250 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 SLURP2P0DP57 97 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 TIMM10P62072 90 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 LRRC26Q2I0M4 334 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 SPATA5Q8NB90 893 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 NSUN4Q96CB9 384 aaKnown RBP8.01□□□□□ -1.13
PTCH1-211ENST00000488809 NEUROD6Q96NK8 337 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 P2RX7Q99572 595 aaKnown RBP8.01□□□□□ -1.13
PTCH1-211ENST00000488809 PAGR1Q9BTK6 254 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 API5Q9BZZ5 524 aaKnown RBP8.01□□□□□ -1.13
PTCH1-211ENST00000488809 SENP6Q9GZR1 1112 aaPredicted RBP8.01□□□□□ -1.13
PTCH1-211ENST00000488809 LRP2BPQ9P2M1 347 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 PA2G4Q9UQ80 394 aaKnown RBP8.01□□□□□ -1.13
PTCH1-211ENST00000488809 IVNS1ABPQ9Y6Y0 642 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 ZNF521Q96K83 1311 aa8.01□□□□□ -1.13
PTCH1-211ENST00000488809 SRGAP3O43295 1099 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 GNAI3P08754 354 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 UQCRFS1P1P0C7P4 283 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 CCND3P30281 292 aaPredicted RBP8□□□□□ -1.13
PTCH1-211ENST00000488809 USP14P54578 494 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 MAP2K5Q13163 448 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 WDR78Q5VTH9 848 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 LHX8Q68G74 356 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L2Q6R6M4 530 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 FOXP4Q8IVH2 680 aaPredicted RBP8□□□□□ -1.13
PTCH1-211ENST00000488809 LPAR1Q92633 364 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 SYMPKQ92797 1274 aaKnown RBP8□□□□□ -1.13
PTCH1-211ENST00000488809 EDC3Q96F86 508 aaKnown RBP8□□□□□ -1.13
PTCH1-211ENST00000488809 FEZ1Q99689 392 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 HMG20BQ9P0W2 317 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 DDX20Q9UHI6 824 aaKnown RBP8□□□□□ -1.13
PTCH1-211ENST00000488809 RABGAP1Q9Y3P9 1069 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 ZNF236Q9UL36 1845 aa8□□□□□ -1.13
PTCH1-211ENST00000488809 ZNFX1Q9P2E3 1918 aaKnown RBP7.99□□□□□ -1.13
PTCH1-211ENST00000488809 KBTBD13C9JR72 458 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 DNM1LO00429 736 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 CT47B1P0C2W7 299 aaPredicted RBP7.99□□□□□ -1.13
PTCH1-211ENST00000488809 ARID4AP29374 1257 aaPredicted RBP7.99□□□□□ -1.13
PTCH1-211ENST00000488809 CNGA1P29973 690 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 ATP2B2Q01814 1243 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 TFCP2Q12800 502 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 MORN1Q5T089 497 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 NAA16Q6N069 864 aaPredicted RBP7.99□□□□□ -1.13
PTCH1-211ENST00000488809 CERS3Q8IU89 383 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 ARRDC4Q8NCT1 418 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 USP6NLQ92738 828 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 FAM161BQ96MY7 647 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 GUCD1Q96NT3 240 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 TXNRD2Q9NNW7 524 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 AATFQ9NY61 560 aaKnown RBP eCLIP7.99□□□□□ -1.13
PTCH1-211ENST00000488809 RBPJLQ9UBG7 517 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 ZBTB21Q9ULJ3 1066 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 FLT1P17948 1338 aa7.99□□□□□ -1.13
PTCH1-211ENST00000488809 EYSQ5T1H1 3165 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 PLXNA1Q9UIW2 1896 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 SLC15A5A6NIM6 579 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L15C9J2P7 530 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L13C9JLJ4 530 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L11C9JVI0 530 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L18D6R9N7 530 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L22D6RA61 530 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L17D6RBQ6 530 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L19D6RCP7 530 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L20D6RJB6 530 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 GDF11O95390 407 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 ATN1P54259 1190 aaPredicted RBP7.98□□□□□ -1.13
PTCH1-211ENST00000488809 USP17L24Q0WX57 530 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 G3BP1Q13283 466 aaKnown RBP eCLIP7.98□□□□□ -1.13
PTCH1-211ENST00000488809 RRP1BQ14684 758 aaKnown RBP7.98□□□□□ -1.13
PTCH1-211ENST00000488809 CCL14Q16627 93 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 Q3C1V9 767 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 CCDC158Q5M9N0 1113 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 TBC1D9Q6ZT07 1266 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 METTL16Q86W50 562 aaKnown RBP7.98□□□□□ -1.13
PTCH1-211ENST00000488809 MAPKAPK5Q8IW41 473 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 MAFAQ8NHW3 353 aaPredicted RBP7.98□□□□□ -1.13
PTCH1-211ENST00000488809 SH3RF3Q8TEJ3 882 aaPredicted RBP7.98□□□□□ -1.13
PTCH1-211ENST00000488809 ZNF384Q8TF68 577 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 TGFBRAP1Q8WUH2 860 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 C12orf42Q96LP6 360 aa7.98□□□□□ -1.13
PTCH1-211ENST00000488809 PORCNQ9H237 461 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms