RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 CST3P01034 146 aaPredicted RBP6.95□□□□□ -1.3
VPS41-213ENST00000485955 CD8BP10966 210 aa6.95□□□□□ -1.3
VPS41-213ENST00000485955 TAL1P17542 331 aaPredicted RBP6.95□□□□□ -1.3
VPS41-213ENST00000485955 GARTP22102 1010 aa6.95□□□□□ -1.3
VPS41-213ENST00000485955 TRIM26Q12899 539 aaPredicted RBP6.95□□□□□ -1.3
VPS41-213ENST00000485955 NKPD1Q17RQ9 610 aa6.95□□□□□ -1.3
VPS41-213ENST00000485955 MCTP1Q6DN14 999 aa6.95□□□□□ -1.3
VPS41-213ENST00000485955 MFSD2AQ8NA29 543 aa6.95□□□□□ -1.3
VPS41-213ENST00000485955 FBXO27Q8NI29 283 aa6.95□□□□□ -1.3
VPS41-213ENST00000485955 ACSF2Q96CM8 615 aaPredicted RBP6.95□□□□□ -1.3
VPS41-213ENST00000485955 KRTAP9-2Q9BYQ4 174 aa6.95□□□□□ -1.3
VPS41-213ENST00000485955 VAV3Q9UKW4 847 aa6.95□□□□□ -1.3
VPS41-213ENST00000485955 PRKCQQ04759 706 aa6.94□□□□□ -1.3
VPS41-213ENST00000485955 AOC3Q16853 763 aa6.94□□□□□ -1.3
VPS41-213ENST00000485955 LETMD1Q6P1Q0 360 aa6.94□□□□□ -1.3
VPS41-213ENST00000485955 MCATQ8IVS2 390 aaKnown RBP6.94□□□□□ -1.3
VPS41-213ENST00000485955 SPACA3Q8IXA5 215 aa6.94□□□□□ -1.3
VPS41-213ENST00000485955 MRPL41Q8IXM3 137 aaKnown RBP6.94□□□□□ -1.3
VPS41-213ENST00000485955 GOLM1Q8NBJ4 401 aa6.94□□□□□ -1.3
VPS41-213ENST00000485955 MISP3Q96FF7 219 aa6.94□□□□□ -1.3
VPS41-213ENST00000485955 TMEM87BQ96K49 555 aa6.94□□□□□ -1.3
VPS41-213ENST00000485955 PRDM5Q9NQX1 630 aaPredicted RBP6.94□□□□□ -1.3
VPS41-213ENST00000485955 TMEM265A0A087WTH1 108 aa6.93□□□□□ -1.3
VPS41-213ENST00000485955 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.93□□□□□ -1.3
VPS41-213ENST00000485955 UPK3BL1B0FP48 263 aa6.93□□□□□ -1.3
VPS41-213ENST00000485955 UPK3BL2E5RIL1 263 aa6.93□□□□□ -1.3
VPS41-213ENST00000485955 PWP1Q13610 501 aa6.93□□□□□ -1.3
VPS41-213ENST00000485955 FBXL19Q6PCT2 694 aa6.93□□□□□ -1.3
VPS41-213ENST00000485955 CBLL1Q75N03 491 aa6.93□□□□□ -1.3
VPS41-213ENST00000485955 CDH24Q86UP0 819 aa6.93□□□□□ -1.3
VPS41-213ENST00000485955 STK11IPQ8N1F8 1099 aa6.93□□□□□ -1.3
VPS41-213ENST00000485955 POLR3KQ9Y2Y1 108 aaPredicted RBP6.93□□□□□ -1.3
VPS41-213ENST00000485955 GRIN3BO60391 1043 aa6.92□□□□□ -1.3
VPS41-213ENST00000485955 ITGAEP38570 1179 aa6.92□□□□□ -1.3
VPS41-213ENST00000485955 PDE4BQ07343 736 aa6.92□□□□□ -1.3
VPS41-213ENST00000485955 SNAP47Q5SQN1 464 aa6.92□□□□□ -1.3
VPS41-213ENST00000485955 SLC6A19Q695T7 634 aa6.92□□□□□ -1.3
VPS41-213ENST00000485955 HRASLS5Q96KN8 279 aa6.92□□□□□ -1.3
VPS41-213ENST00000485955 ADAM30Q9UKF2 790 aa6.92□□□□□ -1.3
VPS41-213ENST00000485955 TPX2Q9ULW0 747 aaKnown RBP6.92□□□□□ -1.3
VPS41-213ENST00000485955 MAPK8IP1Q9UQF2 711 aa6.92□□□□□ -1.3
VPS41-213ENST00000485955 BPNT1O95861 308 aa6.91□□□□□ -1.3
VPS41-213ENST00000485955 PLCG1P19174 1290 aa6.91□□□□□ -1.3
VPS41-213ENST00000485955 AGBL5Q8NDL9 886 aa6.91□□□□□ -1.3
VPS41-213ENST00000485955 BACH2Q9BYV9 841 aa6.91□□□□□ -1.3
VPS41-213ENST00000485955 GGT7Q9UJ14 662 aa6.91□□□□□ -1.3
VPS41-213ENST00000485955 SNX11Q9Y5W9 270 aa6.91□□□□□ -1.3
VPS41-213ENST00000485955 GNAT3A8MTJ3 354 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 TLR3O15455 904 aaKnown RBP6.9□□□□□ -1.3
VPS41-213ENST00000485955 GREM1O60565 184 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 FUT4P22083 530 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 EIF4A3P38919 411 aaKnown RBP6.9□□□□□ -1.3
VPS41-213ENST00000485955 PLCL1Q15111 1095 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 TMEM201Q5SNT2 666 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 SFRP5Q5T4F7 317 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 FAM196AQ6ZSG2 479 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 TMEM87AQ8NBN3 555 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 PPP1R13LQ8WUF5 828 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 KCNQ5Q9NR82 932 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 ADAMTS1Q9UHI8 967 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 ADAMTS6Q9UKP5 1117 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 PRR36Q9H6K5 1346 aa6.9□□□□□ -1.3
VPS41-213ENST00000485955 KRTAP9-6A0A140TA67 174 aa6.89□□□□□ -1.31
VPS41-213ENST00000485955 RBM47A0AV96 593 aaKnown RBP6.89□□□□□ -1.31
VPS41-213ENST00000485955 DNAJA2O60884 412 aa6.89□□□□□ -1.31
VPS41-213ENST00000485955 CBX7O95931 251 aa6.89□□□□□ -1.31
VPS41-213ENST00000485955 ZNF865P0CJ78 1059 aaPredicted RBP6.89□□□□□ -1.31
VPS41-213ENST00000485955 CRKP46108 304 aa6.89□□□□□ -1.31
VPS41-213ENST00000485955 CDKAL1Q5VV42 579 aa6.89□□□□□ -1.31
VPS41-213ENST00000485955 HS2ST1Q7LGA3 356 aa6.89□□□□□ -1.31
VPS41-213ENST00000485955 REC114Q7Z4M0 266 aa6.89□□□□□ -1.31
VPS41-213ENST00000485955 DNAJB8Q8NHS0 232 aa6.89□□□□□ -1.31
VPS41-213ENST00000485955 ZNF296Q8WUU4 475 aaPredicted RBP6.89□□□□□ -1.31
VPS41-213ENST00000485955 HSPA12BQ96MM6 686 aa6.89□□□□□ -1.31
VPS41-213ENST00000485955 MBNL3Q9NUK0 354 aaKnown RBP6.89□□□□□ -1.31
VPS41-213ENST00000485955 CAPN6Q9Y6Q1 641 aa6.89□□□□□ -1.31
VPS41-213ENST00000485955 CHURC1-FNTBB4DL54 471 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 HTR3BO95264 441 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 MPP2Q14168 576 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 ZNF792Q3KQV3 632 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 C22orf34Q6ZV56 151 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 MFSD4AQ8N468 514 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 PRDM7Q9NQW5 492 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 SEMA3GQ9NS98 782 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 REV1Q9UBZ9 1251 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 CEP131Q9UPN4 1083 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 ST14Q9Y5Y6 855 aa6.88□□□□□ -1.31
VPS41-213ENST00000485955 PITPNM2Q9BZ72 1349 aa6.87□□□□□ -1.31
VPS41-213ENST00000485955 FAM155AB1AL88 458 aaPredicted RBP6.87□□□□□ -1.31
VPS41-213ENST00000485955 RNASE1P07998 156 aaKnown RBP6.87□□□□□ -1.31
VPS41-213ENST00000485955 CLCN7P51798 805 aa6.87□□□□□ -1.31
VPS41-213ENST00000485955 TNK2Q07912 1038 aa6.87□□□□□ -1.31
VPS41-213ENST00000485955 DIEXFQ68CQ4 756 aaKnown RBP6.87□□□□□ -1.31
VPS41-213ENST00000485955 FAM13CQ8NE31 585 aa6.87□□□□□ -1.31
VPS41-213ENST00000485955 ASB11Q8WXH4 323 aa6.87□□□□□ -1.31
VPS41-213ENST00000485955 BRMS1Q9HCU9 246 aa6.87□□□□□ -1.31
VPS41-213ENST00000485955 SUPT16HQ9Y5B9 1047 aaKnown RBP6.87□□□□□ -1.31
VPS41-213ENST00000485955 ANGEL2Q5VTE6 544 aaKnown RBP6.86□□□□□ -1.31
VPS41-213ENST00000485955 ZNF746Q6NUN9 644 aaPredicted RBP6.86□□□□□ -1.31
VPS41-213ENST00000485955 SLFN12Q8IYM2 578 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms