RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 PPIP5K2O43314 1243 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 LGR5O75473 907 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 HCLS1P14317 486 aaPredicted RBP6.38□□□□□ -1.39
CCDC39-205ENST00000485055 ZNF76P36508 570 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L24Q0WX57 530 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 GNL2Q13823 731 aaKnown RBP6.38□□□□□ -1.39
CCDC39-205ENST00000485055 BRD3Q15059 726 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 CNTROBQ8N137 903 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 CLP1Q92989 425 aaKnown RBP6.38□□□□□ -1.39
CCDC39-205ENST00000485055 MYD88Q99836 296 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 GPHNQ9NQX3 736 aaPredicted RBP6.38□□□□□ -1.39
CCDC39-205ENST00000485055 MINPP1Q9UNW1 487 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 OTOFQ9HC10 1997 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 RPAP1Q9BWH6 1393 aaPredicted RBP6.38□□□□□ -1.39
CCDC39-205ENST00000485055 PI4KAP2A4QPH2 592 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 MAP3K7O43318 606 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 LZTS3O60299 673 aaPredicted RBP6.38□□□□□ -1.39
CCDC39-205ENST00000485055 FGRP09769 529 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 CDKN1CP49918 316 aaPredicted RBP6.38□□□□□ -1.39
CCDC39-205ENST00000485055 RSBN1LQ6PCB5 846 aaPredicted RBP6.38□□□□□ -1.39
CCDC39-205ENST00000485055 ANKRD18AQ8IVF6 992 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 SUGP1Q8IWZ8 645 aaKnown RBP6.38□□□□□ -1.39
CCDC39-205ENST00000485055 PI4KAP1Q8N8J0 262 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 SPIRE2Q8WWL2 714 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 FAM89AQ96GI7 184 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 C12orf49Q9H741 205 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 ARNT2Q9HBZ2 717 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 MRS2Q9HD23 443 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 GGA1Q9UJY5 639 aa6.38□□□□□ -1.39
CCDC39-205ENST00000485055 COL2A1P02458 1487 aaPredicted RBP6.38□□□□□ -1.39
CCDC39-205ENST00000485055 PRSS47A8MTI9 375 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 ANXA1P04083 346 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 ECE1P42892 770 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 AOC3Q16853 763 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 CDC37L1Q7L3B6 337 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 ENAMQ9NRM1 1142 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 FANCLQ9NW38 375 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L3A6NCW0 530 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L4A6NCW7 530 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 MOXD2PA6NHM9 499 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 PRMT3O60678 531 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 ICMTO60725 284 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 GMPSP49915 693 aaPredicted RBP6.37□□□□□ -1.39
CCDC39-205ENST00000485055 HIRAP54198 1017 aaPredicted RBP6.37□□□□□ -1.39
CCDC39-205ENST00000485055 CTDSPL2Q05D32 466 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 TOMM20Q15388 145 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 DACT2Q5SW24 774 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L2Q6R6M4 530 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 USP17L1Q7RTZ2 530 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 C14orf80Q86SX3 495 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 CCDC24Q8N4L8 307 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 SVIPQ8NHG7 77 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 NPDC1Q9NQX5 325 aaPredicted RBP6.37□□□□□ -1.39
CCDC39-205ENST00000485055 DOCK2Q92608 1830 aa6.37□□□□□ -1.39
CCDC39-205ENST00000485055 CCDC85CA6NKD9 419 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 ECE2O60344 883 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 TGFB3P10600 412 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 MAP2K1Q02750 393 aaPredicted RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 MTX1Q13505 466 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 PLEKHG4Q58EX7 1191 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 CST9Q5W186 159 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 CCSAPQ6IQ19 270 aaPredicted RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 OLFM4Q6UX06 510 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 CAPN12Q6ZSI9 719 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 G2E3Q7L622 706 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 DRC7Q8IY82 874 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 HDAC5Q9UQL6 1122 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 GRM8O00222 908 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 LILRB3O75022 631 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 CIAO1O76071 339 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 CCT4P50991 539 aaKnown RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 EXOSC9Q06265 439 aaKnown RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 AIMP1Q12904 312 aaKnown RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 ARMC3Q5W041 872 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 DUSP9Q99956 384 aaKnown RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 ISY1Q9ULR0 285 aaKnown RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 MROH5Q6ZUA9 1318 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 FAM155AB1AL88 458 aaPredicted RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 H7C1D1 291 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 PSMD14O00487 310 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 HIP1RO75146 1068 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 VDRP11473 427 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 CDC27P30260 824 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 EPS15P42566 896 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 FKBP1CQ5VVH2 108 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 CCDC174Q6PII3 467 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 ZSCAN29Q8IWY8 852 aaPredicted RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 VGLL2Q8N8G2 317 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 LRRN4Q8WUT4 740 aa6.36□□□□□ -1.39
CCDC39-205ENST00000485055 TSPYL2Q9H2G4 693 aaPredicted RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 CNOT7Q9UIV1 285 aaKnown RBP6.36□□□□□ -1.39
CCDC39-205ENST00000485055 SALL1Q9NSC2 1324 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 ATP5J2-PTCD1G3V325 749 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 TBX3O15119 743 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 RGS19P49795 217 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 PTK7Q13308 1070 aa6.35□□□□□ -1.39
CCDC39-205ENST00000485055 MAPRE1Q15691 268 aaKnown RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 L1TD1Q5T7N2 865 aaKnown RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 METTL3Q86U44 580 aaKnown RBP6.35□□□□□ -1.39
CCDC39-205ENST00000485055 SAPCD2Q86UD0 394 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms