RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 TEX11Q8IYF3 940 aa12.17□□□□□ -0.46
CPSF4-213ENST00000484112 ANKLE1Q8NAG6 615 aa12.17□□□□□ -0.46
CPSF4-213ENST00000484112 NSUN4Q96CB9 384 aaKnown RBP12.17□□□□□ -0.46
CPSF4-213ENST00000484112 EAF2Q96CJ1 260 aaPredicted RBP12.17□□□□□ -0.46
CPSF4-213ENST00000484112 NBPF3Q9H094 633 aa12.17□□□□□ -0.46
CPSF4-213ENST00000484112 C11orf49Q9H6J7 331 aa12.17□□□□□ -0.46
CPSF4-213ENST00000484112 DCTPP1Q9H773 170 aa12.17□□□□□ -0.46
CPSF4-213ENST00000484112 GJD2Q9UKL4 321 aa12.17□□□□□ -0.46
CPSF4-213ENST00000484112 NPM3O75607 178 aaKnown RBP12.16□□□□□ -0.46
CPSF4-213ENST00000484112 MAP4K4O95819 1239 aaPredicted RBP12.16□□□□□ -0.46
CPSF4-213ENST00000484112 MTMR2Q13614 643 aa12.16□□□□□ -0.46
CPSF4-213ENST00000484112 SH3RF3Q8TEJ3 882 aaPredicted RBP12.16□□□□□ -0.46
CPSF4-213ENST00000484112 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.16□□□□□ -0.46
CPSF4-213ENST00000484112 TRIB2Q92519 343 aa12.16□□□□□ -0.46
CPSF4-213ENST00000484112 GDF15Q99988 308 aa12.16□□□□□ -0.46
CPSF4-213ENST00000484112 DBNDD2Q9BQY9 259 aa12.16□□□□□ -0.46
CPSF4-213ENST00000484112 NOL10Q9BSC4 688 aaKnown RBP12.16□□□□□ -0.46
CPSF4-213ENST00000484112 TBC1D2Q9BYX2 928 aa12.16□□□□□ -0.46
CPSF4-213ENST00000484112 LRRCC1Q9C099 1032 aa12.16□□□□□ -0.46
CPSF4-213ENST00000484112 TMOD4Q9NZQ9 345 aa12.16□□□□□ -0.46
CPSF4-213ENST00000484112 LRP2BPQ9P2M1 347 aa12.16□□□□□ -0.46
CPSF4-213ENST00000484112 DBNLQ9UJU6 430 aaKnown RBP12.16□□□□□ -0.46
CPSF4-213ENST00000484112 PHIPQ8WWQ0 1821 aa12.16□□□□□ -0.46
CPSF4-213ENST00000484112 PTPRFP10586 1907 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 DOCK3Q8IZD9 2030 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 IFIT2P09913 472 aaKnown RBP12.15□□□□□ -0.46
CPSF4-213ENST00000484112 BMP8BP34820 402 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 MCAMP43121 646 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 HDAC1Q13547 482 aaPredicted RBP12.15□□□□□ -0.46
CPSF4-213ENST00000484112 SH3D19Q5HYK7 790 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 Q7L0L9 218 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 AACSQ86V21 672 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 CCAR1Q8IX12 1150 aaKnown RBP12.15□□□□□ -0.46
CPSF4-213ENST00000484112 DEFB123Q8N688 67 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 CRBNQ96SW2 442 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 P2RX7Q99572 595 aaKnown RBP12.15□□□□□ -0.46
CPSF4-213ENST00000484112 NUDT12Q9BQG2 462 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 TRIM34Q9BYJ4 488 aa12.15□□□□□ -0.46
CPSF4-213ENST00000484112 PRKAR2AP13861 404 aaKnown RBP12.14□□□□□ -0.47
CPSF4-213ENST00000484112 MAGEA10P43363 369 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-213ENST00000484112 MNX1P50219 401 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-213ENST00000484112 BACE1P56817 501 aa12.14□□□□□ -0.47
CPSF4-213ENST00000484112 MAPKAPK5Q8IW41 473 aa12.14□□□□□ -0.47
CPSF4-213ENST00000484112 GPRC5AQ8NFJ5 357 aa12.14□□□□□ -0.47
CPSF4-213ENST00000484112 UBE2OQ9C0C9 1292 aaKnown RBP12.14□□□□□ -0.47
CPSF4-213ENST00000484112 SNRKQ9NRH2 765 aa12.14□□□□□ -0.47
CPSF4-213ENST00000484112 AATFQ9NY61 560 aaKnown RBP eCLIP12.14□□□□□ -0.47
CPSF4-213ENST00000484112 PI4KBQ9UBF8 816 aa12.14□□□□□ -0.47
CPSF4-213ENST00000484112 HERC5Q9UII4 1024 aaKnown RBP12.14□□□□□ -0.47
CPSF4-213ENST00000484112 OGDHLQ9ULD0 1010 aa12.14□□□□□ -0.47
CPSF4-213ENST00000484112 SUPT16HQ9Y5B9 1047 aaKnown RBP12.14□□□□□ -0.47
CPSF4-213ENST00000484112 PCDHB15Q9Y5E8 787 aa12.14□□□□□ -0.47
CPSF4-213ENST00000484112 SZT2Q5T011 3432 aa12.14□□□□□ -0.47
CPSF4-213ENST00000484112 GDF11O95390 407 aa12.13□□□□□ -0.47
CPSF4-213ENST00000484112 BAG3O95817 575 aa12.13□□□□□ -0.47
CPSF4-213ENST00000484112 JAG1P78504 1218 aa12.13□□□□□ -0.47
CPSF4-213ENST00000484112 TTF1Q15361 905 aaPredicted RBP12.13□□□□□ -0.47
CPSF4-213ENST00000484112 CERS3Q8IU89 383 aa12.13□□□□□ -0.47
CPSF4-213ENST00000484112 CRACR2BQ8N4Y2 399 aaPredicted RBP12.13□□□□□ -0.47
CPSF4-213ENST00000484112 TGFBRAP1Q8WUH2 860 aa12.13□□□□□ -0.47
CPSF4-213ENST00000484112 PAGR1Q9BTK6 254 aa12.13□□□□□ -0.47
CPSF4-213ENST00000484112 WDR18Q9BV38 432 aa12.13□□□□□ -0.47
CPSF4-213ENST00000484112 CCDC8Q9H0W5 538 aaPredicted RBP12.13□□□□□ -0.47
CPSF4-213ENST00000484112 CWC22Q9HCG8 908 aaKnown RBP12.13□□□□□ -0.47
CPSF4-213ENST00000484112 TXNRD2Q9NNW7 524 aa12.13□□□□□ -0.47
CPSF4-213ENST00000484112 IL1RAPL2Q9NP60 686 aa12.13□□□□□ -0.47
CPSF4-213ENST00000484112 MORF4L1Q9UBU8 362 aa12.13□□□□□ -0.47
CPSF4-213ENST00000484112 ALPK3Q96L96 1907 aa12.12□□□□□ -0.47
CPSF4-213ENST00000484112 C19orf81C9J6K1 198 aa12.12□□□□□ -0.47
CPSF4-213ENST00000484112 ASNSP08243 561 aa12.12□□□□□ -0.47
CPSF4-213ENST00000484112 ZKSCAN1P17029 563 aaPredicted RBP12.12□□□□□ -0.47
CPSF4-213ENST00000484112 HERVK_113P62684 666 aa12.12□□□□□ -0.47
CPSF4-213ENST00000484112 SHROOM1Q2M3G4 852 aaPredicted RBP12.12□□□□□ -0.47
CPSF4-213ENST00000484112 Q3C1V9 767 aa12.12□□□□□ -0.47
CPSF4-213ENST00000484112 NAA16Q6N069 864 aaPredicted RBP12.12□□□□□ -0.47
CPSF4-213ENST00000484112 TDHQ8IZJ6 230 aa12.12□□□□□ -0.47
CPSF4-213ENST00000484112 DHX36Q9H2U1 1008 aaKnown RBP12.12□□□□□ -0.47
CPSF4-213ENST00000484112 PALD1Q9ULE6 856 aa12.12□□□□□ -0.47
CPSF4-213ENST00000484112 COL2A1P02458 1487 aaPredicted RBP12.11□□□□□ -0.47
CPSF4-213ENST00000484112 USP17L10C9JJH3 530 aa12.11□□□□□ -0.47
CPSF4-213ENST00000484112 ATP5JP18859 108 aa12.11□□□□□ -0.47
CPSF4-213ENST00000484112 CCND3P30281 292 aaPredicted RBP12.11□□□□□ -0.47
CPSF4-213ENST00000484112 MAPK4P31152 587 aa12.11□□□□□ -0.47
CPSF4-213ENST00000484112 HOXA7P31268 230 aaPredicted RBP12.11□□□□□ -0.47
CPSF4-213ENST00000484112 CACNB2Q08289 660 aaPredicted RBP12.11□□□□□ -0.47
CPSF4-213ENST00000484112 CCL14Q16627 93 aa12.11□□□□□ -0.47
CPSF4-213ENST00000484112 FOXP4Q8IVH2 680 aaPredicted RBP12.11□□□□□ -0.47
CPSF4-213ENST00000484112 SOCS4Q8WXH5 440 aa12.11□□□□□ -0.47
CPSF4-213ENST00000484112 GPATCH3Q96I76 525 aa12.11□□□□□ -0.47
CPSF4-213ENST00000484112 RWDD1Q9H446 243 aaPredicted RBP12.11□□□□□ -0.47
CPSF4-213ENST00000484112 TLR7Q9NYK1 1049 aaKnown RBP12.11□□□□□ -0.47
CPSF4-213ENST00000484112 RBPJLQ9UBG7 517 aa12.11□□□□□ -0.47
CPSF4-213ENST00000484112 SAP30BPQ9UHR5 308 aaKnown RBP12.11□□□□□ -0.47
CPSF4-213ENST00000484112 PFASO15067 1338 aa12.11□□□□□ -0.47
CPSF4-213ENST00000484112 LOC285556D6RIA3 1793 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 APBB1O00213 710 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 CYP2E1P05181 493 aaPredicted RBP12.1□□□□□ -0.47
CPSF4-213ENST00000484112 XRCC5P13010 732 aaKnown RBP12.1□□□□□ -0.47
CPSF4-213ENST00000484112 PLCG2P16885 1265 aa12.1□□□□□ -0.47
CPSF4-213ENST00000484112 RGS2P41220 211 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms