RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 PRPF40BQ6NWY9 871 aaKnown RBP6.12□□□□□ -1.43
PTCD3-214ENST00000483925 ZNF574Q6ZN55 896 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-214ENST00000483925 FILIP1Q7Z7B0 1213 aa6.12□□□□□ -1.43
PTCD3-214ENST00000483925 NETO1Q8TDF5 533 aa6.12□□□□□ -1.43
PTCD3-214ENST00000483925 WDR89Q96FK6 387 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-214ENST00000483925 CSRNP1Q96S65 589 aa6.12□□□□□ -1.43
PTCD3-214ENST00000483925 DNAJC25Q9H1X3 360 aa6.12□□□□□ -1.43
PTCD3-214ENST00000483925 CCDC86Q9H6F5 360 aaKnown RBP6.12□□□□□ -1.43
PTCD3-214ENST00000483925 SPC25Q9HBM1 224 aa6.12□□□□□ -1.43
PTCD3-214ENST00000483925 TRAK1Q9UPV9 953 aa6.12□□□□□ -1.43
PTCD3-214ENST00000483925 GADD45BO75293 160 aaPredicted RBP6.11□□□□□ -1.43
PTCD3-214ENST00000483925 PARNO95453 639 aaKnown RBP6.11□□□□□ -1.43
PTCD3-214ENST00000483925 FAM87AP0C7U9 286 aa6.11□□□□□ -1.43
PTCD3-214ENST00000483925 ZNF157P51786 506 aaPredicted RBP6.11□□□□□ -1.43
PTCD3-214ENST00000483925 ID3Q02535 119 aa6.11□□□□□ -1.43
PTCD3-214ENST00000483925 BNIP3Q12983 259 aa6.11□□□□□ -1.43
PTCD3-214ENST00000483925 CDK5R2Q13319 367 aa6.11□□□□□ -1.43
PTCD3-214ENST00000483925 WFDC3Q8IUB2 231 aa6.11□□□□□ -1.43
PTCD3-214ENST00000483925 SMYD4Q8IYR2 804 aaPredicted RBP6.11□□□□□ -1.43
PTCD3-214ENST00000483925 GPRASP2Q96D09 838 aa6.11□□□□□ -1.43
PTCD3-214ENST00000483925 FANCD2OSQ96PS1 177 aa6.11□□□□□ -1.43
PTCD3-214ENST00000483925 ZC3H12CQ9C0D7 883 aaKnown RBP6.11□□□□□ -1.43
PTCD3-214ENST00000483925 SLKQ9H2G2 1235 aaPredicted RBP6.11□□□□□ -1.43
PTCD3-214ENST00000483925 PCDH12Q9NPG4 1184 aa6.11□□□□□ -1.43
PTCD3-214ENST00000483925 USP31Q70CQ4 1352 aa6.1□□□□□ -1.43
PTCD3-214ENST00000483925 EIF1AYO14602 144 aaKnown RBP6.1□□□□□ -1.43
PTCD3-214ENST00000483925 FAAP100Q0VG06 881 aa6.1□□□□□ -1.43
PTCD3-214ENST00000483925 LCE1DQ5T752 114 aa6.1□□□□□ -1.43
PTCD3-214ENST00000483925 PLD6Q8N2A8 252 aaKnown RBP6.1□□□□□ -1.43
PTCD3-214ENST00000483925 SEC16BQ96JE7 1060 aa6.1□□□□□ -1.43
PTCD3-214ENST00000483925 KRT82Q9NSB4 513 aa6.1□□□□□ -1.43
PTCD3-214ENST00000483925 SIRPGQ9P1W8 387 aa6.1□□□□□ -1.43
PTCD3-214ENST00000483925 VAV3Q9UKW4 847 aa6.1□□□□□ -1.43
PTCD3-214ENST00000483925 U2SURPO15042 1029 aaKnown RBP6.09□□□□□ -1.43
PTCD3-214ENST00000483925 ZNF862O60290 1169 aa6.09□□□□□ -1.43
PTCD3-214ENST00000483925 RNGTTO60942 597 aaKnown RBP6.09□□□□□ -1.43
PTCD3-214ENST00000483925 SSBP05455 408 aaKnown RBP eCLIP6.09□□□□□ -1.43
PTCD3-214ENST00000483925 GSTP1P09211 210 aaKnown RBP6.09□□□□□ -1.43
PTCD3-214ENST00000483925 CD8BP10966 210 aa6.09□□□□□ -1.43
PTCD3-214ENST00000483925 FUT4P22083 530 aa6.09□□□□□ -1.43
PTCD3-214ENST00000483925 PAK2Q13177 524 aa6.09□□□□□ -1.43
PTCD3-214ENST00000483925 TAF1CQ15572 869 aaPredicted RBP6.09□□□□□ -1.43
PTCD3-214ENST00000483925 KIF4BQ2VIQ3 1234 aa6.09□□□□□ -1.43
PTCD3-214ENST00000483925 ATG4DQ86TL0 474 aaPredicted RBP6.09□□□□□ -1.43
PTCD3-214ENST00000483925 FAM181AQ8N9Y4 354 aa6.09□□□□□ -1.43
PTCD3-214ENST00000483925 ZNF526Q8TF50 670 aaPredicted RBP6.09□□□□□ -1.43
PTCD3-214ENST00000483925 DISC1Q9NRI5 854 aa6.09□□□□□ -1.43
PTCD3-214ENST00000483925 SLC52A1Q9NWF4 448 aa6.09□□□□□ -1.43
PTCD3-214ENST00000483925 CHPF2Q9P2E5 772 aa6.09□□□□□ -1.43
PTCD3-214ENST00000483925 PCOLCE2Q9UKZ9 415 aa6.09□□□□□ -1.43
PTCD3-214ENST00000483925 PRKCQQ04759 706 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 PPP2R3AQ06190 1150 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 SERINC3Q13530 473 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 GRM2Q14416 872 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 TTLL4Q14679 1199 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 PLEKHG4Q58EX7 1191 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 EXOC8Q8IYI6 725 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 GLIS3Q8NEA6 775 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 RASGRP4Q8TDF6 673 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 MORC4Q8TE76 937 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 SRPK1Q96SB4 655 aaKnown RBP6.08□□□□□ -1.44
PTCD3-214ENST00000483925 MKNK2Q9HBH9 465 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 PPP4R2Q9NY27 417 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 FAN1Q9Y2M0 1017 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 PCDHGC5Q9Y5F6 944 aa6.08□□□□□ -1.44
PTCD3-214ENST00000483925 S100BP04271 92 aaPredicted RBP6.07□□□□□ -1.44
PTCD3-214ENST00000483925 HCLS1P14317 486 aaPredicted RBP6.07□□□□□ -1.44
PTCD3-214ENST00000483925 ST13P50502 369 aaKnown RBP6.07□□□□□ -1.44
PTCD3-214ENST00000483925 IFI16Q16666 785 aaKnown RBP6.07□□□□□ -1.44
PTCD3-214ENST00000483925 PLEKHG6Q3KR16 790 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 TAF7LQ5H9L4 462 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 ZNF648Q5T619 568 aaPredicted RBP6.07□□□□□ -1.44
PTCD3-214ENST00000483925 DTHD1Q6ZMT9 781 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 ARHGAP27Q6ZUM4 889 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 LRP10Q7Z4F1 713 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 CCAR1Q8IX12 1150 aaKnown RBP6.07□□□□□ -1.44
PTCD3-214ENST00000483925 PI4K2BQ8TCG2 481 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 EPS8L3Q8TE67 593 aaKnown RBP6.07□□□□□ -1.44
PTCD3-214ENST00000483925 PCGF6Q9BYE7 350 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 IRF2BPLQ9H1B7 796 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 C12orf49Q9H741 205 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 RC3H2Q9HBD1 1191 aaKnown RBP6.07□□□□□ -1.44
PTCD3-214ENST00000483925 TMEM39AQ9NV64 488 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.07□□□□□ -1.44
PTCD3-214ENST00000483925 CARMIL2Q6F5E8 1435 aa6.07□□□□□ -1.44
PTCD3-214ENST00000483925 RNASE1P07998 156 aaKnown RBP6.06□□□□□ -1.44
PTCD3-214ENST00000483925 AOC3Q16853 763 aa6.06□□□□□ -1.44
PTCD3-214ENST00000483925 CCDC136Q96JN2 1154 aa6.06□□□□□ -1.44
PTCD3-214ENST00000483925 HRASLS5Q96KN8 279 aa6.06□□□□□ -1.44
PTCD3-214ENST00000483925 RNPC3Q96LT9 517 aaKnown RBP6.06□□□□□ -1.44
PTCD3-214ENST00000483925 DUSP23Q9BVJ7 150 aa6.06□□□□□ -1.44
PTCD3-214ENST00000483925 TRIM55Q9BYV6 548 aa6.06□□□□□ -1.44
PTCD3-214ENST00000483925 SSU72Q9NP77 194 aaKnown RBP6.06□□□□□ -1.44
PTCD3-214ENST00000483925 MBNL3Q9NUK0 354 aaKnown RBP6.06□□□□□ -1.44
PTCD3-214ENST00000483925 GPN3Q9UHW5 284 aaPredicted RBP6.06□□□□□ -1.44
PTCD3-214ENST00000483925 TMEM265A0A087WTH1 108 aa6.05□□□□□ -1.44
PTCD3-214ENST00000483925 CCDC194A0A1B0GVG4 234 aa6.05□□□□□ -1.44
PTCD3-214ENST00000483925 LEFTY1O75610 366 aa6.05□□□□□ -1.44
PTCD3-214ENST00000483925 FARP2O94887 1054 aaPredicted RBP6.05□□□□□ -1.44
PTCD3-214ENST00000483925 OXCT1P55809 520 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms