RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 TMEM87BQ96K49 555 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 TEPSINQ96N21 525 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 LARP6Q9BRS8 491 aaKnown RBP9.73□□□□□ -0.85
USP4-210ENST00000483212 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.73□□□□□ -0.85
USP4-210ENST00000483212 SENP2Q9HC62 589 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 TMOD2Q9NZR1 351 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 SERPINB13Q9UIV8 391 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 HACL1Q9UJ83 578 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 LIMCH1Q9UPQ0 1083 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 GREB1LQ9C091 1923 aaPredicted RBP9.73□□□□□ -0.85
USP4-210ENST00000483212 MYO1BO43795 1136 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 HLA-DOAP06340 250 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 NOVP48745 357 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 ANKRD1Q15327 319 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 ME3Q16798 604 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 RRP12Q5JTH9 1297 aaKnown RBP9.72□□□□□ -0.85
USP4-210ENST00000483212 TATDN1Q6P1N9 297 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 SGMS1Q86VZ5 419 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 TMEM39BQ9GZU3 492 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 LY9Q9HBG7 655 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 VEZTQ9HBM0 779 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 ADARB2Q9NS39 739 aaKnown RBP9.72□□□□□ -0.85
USP4-210ENST00000483212 PI4KBQ9UBF8 816 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 SWAP70Q9UH65 585 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 BRPF3Q9ULD4 1205 aa9.72□□□□□ -0.85
USP4-210ENST00000483212 IGKV6D-41A0A0C4DH26 115 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 RANBP6O60518 1105 aaKnown RBP9.71□□□□□ -0.86
USP4-210ENST00000483212 LMOD1P29536 600 aaPredicted RBP9.71□□□□□ -0.86
USP4-210ENST00000483212 LIFRP42702 1097 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 TFAP4Q01664 338 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 MAP3K10Q02779 954 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 APOBRQ0VD83 1088 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 RASA3Q14644 834 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 RRP1BQ14684 758 aaKnown RBP9.71□□□□□ -0.86
USP4-210ENST00000483212 FAM47AQ5JRC9 791 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 ANGEL2Q5VTE6 544 aaKnown RBP9.71□□□□□ -0.86
USP4-210ENST00000483212 RCSD1Q6JBY9 416 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 DPY19L2Q6NUT2 758 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 NOL8Q76FK4 1167 aaKnown RBP9.71□□□□□ -0.86
USP4-210ENST00000483212 FOXP4Q8IVH2 680 aaPredicted RBP9.71□□□□□ -0.86
USP4-210ENST00000483212 ENAHQ8N8S7 591 aaPredicted RBP9.71□□□□□ -0.86
USP4-210ENST00000483212 NEDD1Q8NHV4 660 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 ANKS1AQ92625 1134 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 ZSCAN31Q96LW9 406 aaPredicted RBP9.71□□□□□ -0.86
USP4-210ENST00000483212 CSRNP1Q96S65 589 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 ZKSCAN3Q9BRR0 538 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 IL17RBQ9NRM6 502 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 TOMM22Q9NS69 142 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 TCP11L1Q9NUJ3 509 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 GGA3Q9NZ52 723 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 ANGEL1Q9UNK9 670 aaKnown RBP9.71□□□□□ -0.86
USP4-210ENST00000483212 SCAF8Q9UPN6 1271 aaKnown RBP9.71□□□□□ -0.86
USP4-210ENST00000483212 HPS5Q9UPZ3 1129 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 TNKSO95271 1327 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 PITPNM2Q9BZ72 1349 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 NID2Q14112 1375 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 SSC5DA1L4H1 1573 aa9.71□□□□□ -0.86
USP4-210ENST00000483212 SCN4AP35499 1836 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 TSPY2A6NKD2 308 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 FAM196BA6NMK8 535 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 IFIT3O14879 490 aaKnown RBP9.7□□□□□ -0.86
USP4-210ENST00000483212 TBC1D12O60347 775 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 NMT2O60551 498 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 AKR1B1P15121 316 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 PDIA3P30101 505 aaKnown RBP9.7□□□□□ -0.86
USP4-210ENST00000483212 DDIT3P35638 169 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 TNNI2P48788 182 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 TMEM67Q5HYA8 995 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 APOBEC3FQ8IUX4 373 aaKnown RBP9.7□□□□□ -0.86
USP4-210ENST00000483212 ZSCAN29Q8IWY8 852 aaPredicted RBP9.7□□□□□ -0.86
USP4-210ENST00000483212 ZNF274Q96GC6 653 aaPredicted RBP9.7□□□□□ -0.86
USP4-210ENST00000483212 ZSCAN10Q96SZ4 725 aaPredicted RBP9.7□□□□□ -0.86
USP4-210ENST00000483212 TAF1DQ9H5J8 278 aaPredicted RBP9.7□□□□□ -0.86
USP4-210ENST00000483212 MKNK2Q9HBH9 465 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 ZNF287Q9HBT7 754 aa9.7□□□□□ -0.86
USP4-210ENST00000483212 SH2B1Q9NRF2 756 aaPredicted RBP9.7□□□□□ -0.86
USP4-210ENST00000483212 HERC5Q9UII4 1024 aaKnown RBP9.7□□□□□ -0.86
USP4-210ENST00000483212 KLF18A0A0U1RQI7 1052 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 PFKFB2O60825 505 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 GUCY1A2P33402 732 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 EPHX2P34913 555 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 JAG1P78504 1218 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 SCRN1Q12765 414 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 TNFAIP1Q13829 316 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 WTAPQ15007 396 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 SHROOM1Q2M3G4 852 aaPredicted RBP9.69□□□□□ -0.86
USP4-210ENST00000483212 APOA5Q6Q788 366 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 USP50Q70EL3 339 aaPredicted RBP9.69□□□□□ -0.86
USP4-210ENST00000483212 DGKHQ86XP1 1220 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 ZNF444Q8N0Y2 327 aaPredicted RBP9.69□□□□□ -0.86
USP4-210ENST00000483212 GTF3C6Q969F1 213 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 INTS4Q96HW7 963 aaKnown RBP9.69□□□□□ -0.86
USP4-210ENST00000483212 UBAC1Q9BSL1 405 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 DEFB129Q9H1M3 183 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 PPP2R3BQ9Y5P8 575 aa9.69□□□□□ -0.86
USP4-210ENST00000483212 PHF20L1A8MW92 1017 aa9.68□□□□□ -0.86
USP4-210ENST00000483212 TSPY3P0CV98 308 aa9.68□□□□□ -0.86
USP4-210ENST00000483212 TSPY8P0CW00 308 aa9.68□□□□□ -0.86
USP4-210ENST00000483212 SART3Q15020 963 aaKnown RBP9.68□□□□□ -0.86
USP4-210ENST00000483212 IQCA1Q86XH1 822 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms