RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 PLCB2Q00722 1185 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 TYRO3Q06418 890 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 SSRP1Q08945 709 aaKnown RBP16.73■□□□□ 0.27
CHD3-211ENST00000481999 USP17L3A6NCW0 530 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 USP17L4A6NCW7 530 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 TSPY2A6NKD2 308 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 BTBD18B2RXH4 712 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 IFNAR1P17181 557 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 NR5A1Q13285 461 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 C15orf52Q6ZUT6 534 aaKnown RBP16.73■□□□□ 0.27
CHD3-211ENST00000481999 USP17L1Q7RTZ2 530 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 CCAR1Q8IX12 1150 aaKnown RBP16.73■□□□□ 0.27
CHD3-211ENST00000481999 DBNDD1Q9H9R9 158 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 UQCRHLA0A096LP55 91 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 A0A1B0GVL5 298 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 CDKL5O76039 1030 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 FMNL1O95466 1100 aaPredicted RBP16.72■□□□□ 0.27
CHD3-211ENST00000481999 UQCRHP07919 91 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 FGRP09769 529 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 SCNN1DP51172 638 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 TROAPQ12815 778 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 CPLX2Q6PUV4 134 aaKnown RBP16.72■□□□□ 0.27
CHD3-211ENST00000481999 IQCA1Q86XH1 822 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 SP8Q8IXZ3 490 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 CRACR2BQ8N4Y2 399 aaPredicted RBP16.72■□□□□ 0.27
CHD3-211ENST00000481999 LINC00301Q8NCQ3 95 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 OXER1Q8TDS5 423 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 ZNF830Q96NB3 372 aaPredicted RBP16.72■□□□□ 0.27
CHD3-211ENST00000481999 CLSTN2Q9H4D0 955 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 ARPP21Q9UBL0 812 aaPredicted RBP16.72■□□□□ 0.27
CHD3-211ENST00000481999 C12orf60Q5U649 245 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 RBM43Q6ZSC3 357 aaKnown RBP16.72■□□□□ 0.27
CHD3-211ENST00000481999 TTC12Q9H892 705 aaPredicted RBP16.72■□□□□ 0.27
CHD3-211ENST00000481999 IL17RBQ9NRM6 502 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 PCDHAC2Q9Y5I4 1007 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 MRVI1Q9Y6F6 885 aa16.72■□□□□ 0.27
CHD3-211ENST00000481999 DPP8Q6V1X1 898 aaPredicted RBP16.71■□□□□ 0.27
CHD3-211ENST00000481999 LAMB1P07942 1786 aa16.71■□□□□ 0.27
CHD3-211ENST00000481999 LRRC37AA6NMS7 1700 aa16.71■□□□□ 0.27
CHD3-211ENST00000481999 GOLGA6L6A8MZA4 724 aa16.71■□□□□ 0.27
CHD3-211ENST00000481999 AP5Z1O43299 807 aa16.71■□□□□ 0.27
CHD3-211ENST00000481999 NPR1P16066 1061 aa16.71■□□□□ 0.27
CHD3-211ENST00000481999 TFAP4Q01664 338 aa16.71■□□□□ 0.27
CHD3-211ENST00000481999 PICALMQ13492 652 aa16.71■□□□□ 0.27
CHD3-211ENST00000481999 SNW1Q13573 536 aaKnown RBP16.71■□□□□ 0.27
CHD3-211ENST00000481999 GNL2Q13823 731 aaKnown RBP16.71■□□□□ 0.27
CHD3-211ENST00000481999 NOLC1Q14978 699 aaKnown RBP eCLIP16.71■□□□□ 0.27
CHD3-211ENST00000481999 RCSD1Q6JBY9 416 aa16.71■□□□□ 0.27
CHD3-211ENST00000481999 ZNF396Q96N95 335 aaPredicted RBP16.71■□□□□ 0.27
CHD3-211ENST00000481999 VPS54Q9P1Q0 977 aa16.71■□□□□ 0.27
CHD3-211ENST00000481999 FAM205CA6NFA0 338 aa16.7■□□□□ 0.26
CHD3-211ENST00000481999 STK38Q15208 465 aa16.7■□□□□ 0.26
CHD3-211ENST00000481999 SF3A1Q15459 793 aaKnown RBP16.7■□□□□ 0.26
CHD3-211ENST00000481999 UBE2Q2Q8WVN8 375 aa16.7■□□□□ 0.26
CHD3-211ENST00000481999 ZC3H12CQ9C0D7 883 aaKnown RBP16.7■□□□□ 0.26
CHD3-211ENST00000481999 ADAMTSL1Q8N6G6 1762 aa16.7■□□□□ 0.26
CHD3-211ENST00000481999 WDHD1O75717 1129 aaPredicted RBP16.7■□□□□ 0.26
CHD3-211ENST00000481999 RHBDL3P58872 404 aa16.7■□□□□ 0.26
CHD3-211ENST00000481999 SLC15A2Q16348 729 aa16.7■□□□□ 0.26
CHD3-211ENST00000481999 NOM1Q5C9Z4 860 aaKnown RBP16.7■□□□□ 0.26
CHD3-211ENST00000481999 FSIP1Q8NA03 581 aa16.7■□□□□ 0.26
CHD3-211ENST00000481999 STK32BQ9NY57 414 aa16.7■□□□□ 0.26
CHD3-211ENST00000481999 RTEL1Q9NZ71 1219 aa16.7■□□□□ 0.26
CHD3-211ENST00000481999 V9GY48 417 aaPredicted RBP16.7■□□□□ 0.26
CHD3-211ENST00000481999 CDK5RAP2Q96SN8 1893 aa16.7■□□□□ 0.26
CHD3-211ENST00000481999 NRXN2Q9P2S2 1712 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 DYNC1I1O14576 645 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 ADAMTS3O15072 1205 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 BAG3O95817 575 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 ATP2B1P20020 1258 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 FUT2Q10981 343 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 DNTTIP2Q5QJE6 756 aaKnown RBP16.69■□□□□ 0.26
CHD3-211ENST00000481999 C2CD5Q86YS7 1000 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 TEX11Q8IYF3 940 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 PDCL3Q9H2J4 239 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 FLT1P17948 1338 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 ORC4O43929 436 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 NDUFA8P51970 172 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 PDE4BQ07343 736 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 PKN1Q16512 942 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 SBK1Q52WX2 424 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 CATIPQ7Z7H3 387 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 DIS3L2Q8IYB7 885 aaKnown RBP16.69■□□□□ 0.26
CHD3-211ENST00000481999 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.69■□□□□ 0.26
CHD3-211ENST00000481999 SPTLC3Q9NUV7 552 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 DAGLAQ9Y4D2 1042 aa16.69■□□□□ 0.26
CHD3-211ENST00000481999 PDE6BP35913 854 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 TRIM29Q14134 588 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 GLIPR1L2Q4G1C9 344 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 EARS2Q5JPH6 523 aaKnown RBP16.68■□□□□ 0.26
CHD3-211ENST00000481999 ANO1Q5XXA6 986 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 TRIM22Q8IYM9 498 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 TMTC2Q8N394 836 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 SRBD1Q8N5C6 995 aaKnown RBP16.68■□□□□ 0.26
CHD3-211ENST00000481999 MASTLQ96GX5 879 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 CLIC6Q96NY7 704 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 CPVLQ9H3G5 476 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 SLX4Q8IY92 1834 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 MYH6P13533 1939 aa16.68■□□□□ 0.26
CHD3-211ENST00000481999 GPR75-ASB3A0A0A6YYF3 556 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms