RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 FANCIQ9NVI1 1328 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.55□□□□□ -0.88
USP54-213ENST00000481991 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.55□□□□□ -0.88
USP54-213ENST00000481991 TRIM43BA6NCK2 446 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 MSCO60682 206 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 RAG1P15918 1043 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 PHKA1P46020 1223 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 BACE1P56817 501 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 SH3D19Q5HYK7 790 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 MORN1Q5T089 497 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 ERICH6Q7L0X2 663 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 DPP9Q86TI2 863 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 CRACR2BQ8N4Y2 399 aaPredicted RBP9.55□□□□□ -0.88
USP54-213ENST00000481991 ANKRD44Q8N8A2 993 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 ATXN2LQ8WWM7 1075 aaKnown RBP9.55□□□□□ -0.88
USP54-213ENST00000481991 TRIM43Q96BQ3 446 aaPredicted RBP9.55□□□□□ -0.88
USP54-213ENST00000481991 ZNF576Q9H609 170 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 A0A1B0GUL6 1792 aa9.55□□□□□ -0.88
USP54-213ENST00000481991 ATRNL1Q5VV63 1379 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 C19orf81C9J6K1 198 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 USP17L10C9JJH3 530 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 GDF11O95390 407 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 DNAJB2P25686 324 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 HOXA7P31268 230 aaPredicted RBP9.54□□□□□ -0.88
USP54-213ENST00000481991 CCNA1P78396 465 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 RRP1BQ14684 758 aaKnown RBP9.54□□□□□ -0.88
USP54-213ENST00000481991 CCDC27Q2M243 656 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 MICALL1Q8N3F8 863 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 USP6NLQ92738 828 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 TIFAQ96CG3 184 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 NOL10Q9BSC4 688 aaKnown RBP9.54□□□□□ -0.88
USP54-213ENST00000481991 PRDM12Q9H4Q4 367 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 RAI14Q9P0K7 980 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 VCANP13611 3396 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 KIF16BQ96L93 1317 aa9.54□□□□□ -0.88
USP54-213ENST00000481991 SEMA3EO15041 775 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 LDHCP07864 332 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 ADORA1P30542 326 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 TIMM10P62072 90 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 MECOMQ03112 1051 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 TLE2Q04725 743 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 RABL6Q3YEC7 729 aaPredicted RBP9.53□□□□□ -0.88
USP54-213ENST00000481991 PRAMEF19Q5SWL8 479 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 CCDC102BQ68D86 513 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 POTEEQ6S8J3 1075 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 TEX11Q8IYF3 940 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 FEZ1Q99689 392 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 TSPYL2Q9H2G4 693 aaPredicted RBP9.53□□□□□ -0.88
USP54-213ENST00000481991 TMEM39AQ9NV64 488 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 THEGQ9P2T0 379 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 TACC3Q9Y6A5 838 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 MROH7-TTC4A0A0A0MT08 1334 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 IL16Q14005 1332 aa9.53□□□□□ -0.88
USP54-213ENST00000481991 GPR75-ASB3A0A0A6YYF3 556 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 SLC15A5A6NIM6 579 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 PQBP1O60828 265 aaKnown RBP9.52□□□□□ -0.89
USP54-213ENST00000481991 ASNSP08243 561 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 PTPREP23469 700 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 EPHB4P54760 987 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 GSTO1P78417 241 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 FPGSQ05932 587 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 SKIV2LQ15477 1246 aaKnown RBP9.52□□□□□ -0.89
USP54-213ENST00000481991 GORABQ5T7V8 394 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 USP17L2Q6R6M4 530 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 TBC1D9Q6ZT07 1266 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 TRPV1Q8NER1 839 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 NPLOC4Q8TAT6 608 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 GTF3C2Q8WUA4 911 aaPredicted RBP9.52□□□□□ -0.89
USP54-213ENST00000481991 NEUROD6Q96NK8 337 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 NECAB3Q96P71 396 aaPredicted RBP9.52□□□□□ -0.89
USP54-213ENST00000481991 WDR18Q9BV38 432 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 C1QTNF1Q9BXJ1 281 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 PDLIM7Q9NR12 457 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 PI4KBQ9UBF8 816 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 HCN4Q9Y3Q4 1203 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 GAKO14976 1311 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 SALL1Q9NSC2 1324 aa9.52□□□□□ -0.89
USP54-213ENST00000481991 USP17L15C9J2P7 530 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 USP17L13C9JLJ4 530 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 USP17L11C9JVI0 530 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 USP17L18D6R9N7 530 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 USP17L22D6RA61 530 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 USP17L17D6RBQ6 530 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 USP17L19D6RCP7 530 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 USP17L20D6RJB6 530 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 APBB1O00213 710 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 CLTBP09497 229 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 ITGB8P26012 769 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 RHBDL3P58872 404 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 USP17L24Q0WX57 530 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 SHROOM1Q2M3G4 852 aaPredicted RBP9.51□□□□□ -0.89
USP54-213ENST00000481991 SAMD1Q6SPF0 538 aaPredicted RBP9.51□□□□□ -0.89
USP54-213ENST00000481991 ATG9AQ7Z3C6 839 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 SH3RF3Q8TEJ3 882 aaPredicted RBP9.51□□□□□ -0.89
USP54-213ENST00000481991 FAM163AQ96GL9 167 aaPredicted RBP9.51□□□□□ -0.89
USP54-213ENST00000481991 RNF39Q9H2S5 420 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 PRKRIP1Q9H875 184 aaPredicted RBP9.51□□□□□ -0.89
USP54-213ENST00000481991 EMILIN3Q9NT22 766 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 LRP2BPQ9P2M1 347 aa9.51□□□□□ -0.89
USP54-213ENST00000481991 SAP30BPQ9UHR5 308 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms