RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 GJD2Q9UKL4 321 aa12.15□□□□□ -0.46
GPNMB-211ENST00000479625 OGDHLQ9ULD0 1010 aa12.15□□□□□ -0.46
GPNMB-211ENST00000479625 FOCADQ5VW36 1801 aa12.15□□□□□ -0.46
GPNMB-211ENST00000479625 ENTPD3O75355 529 aa12.14□□□□□ -0.47
GPNMB-211ENST00000479625 LRRC26Q2I0M4 334 aa12.14□□□□□ -0.47
GPNMB-211ENST00000479625 IDI2Q9BXS1 227 aa12.14□□□□□ -0.47
GPNMB-211ENST00000479625 PNMA3Q9UL41 463 aa12.14□□□□□ -0.47
GPNMB-211ENST00000479625 GAKO14976 1311 aa12.13□□□□□ -0.47
GPNMB-211ENST00000479625 CTNND1O60716 968 aaKnown RBP12.13□□□□□ -0.47
GPNMB-211ENST00000479625 COL6A1P12109 1028 aa12.13□□□□□ -0.47
GPNMB-211ENST00000479625 CYP2B6P20813 491 aa12.13□□□□□ -0.47
GPNMB-211ENST00000479625 HMGCS2P54868 508 aa12.13□□□□□ -0.47
GPNMB-211ENST00000479625 MAP3K10Q02779 954 aa12.13□□□□□ -0.47
GPNMB-211ENST00000479625 LPIN2Q92539 896 aa12.13□□□□□ -0.47
GPNMB-211ENST00000479625 RLFQ13129 1914 aa12.13□□□□□ -0.47
GPNMB-211ENST00000479625 SALL1Q9NSC2 1324 aa12.12□□□□□ -0.47
GPNMB-211ENST00000479625 EYA2O00167 538 aa12.12□□□□□ -0.47
GPNMB-211ENST00000479625 PHKA1P46020 1223 aa12.12□□□□□ -0.47
GPNMB-211ENST00000479625 RFX5P48382 616 aaPredicted RBP12.12□□□□□ -0.47
GPNMB-211ENST00000479625 SPP2Q13103 211 aa12.12□□□□□ -0.47
GPNMB-211ENST00000479625 MAP3K21Q5TCX8 1036 aa12.12□□□□□ -0.47
GPNMB-211ENST00000479625 ATG9AQ7Z3C6 839 aa12.12□□□□□ -0.47
GPNMB-211ENST00000479625 HS6ST3Q8IZP7 471 aa12.12□□□□□ -0.47
GPNMB-211ENST00000479625 PROCA1Q8NCQ7 364 aaPredicted RBP12.12□□□□□ -0.47
GPNMB-211ENST00000479625 SIL1Q9H173 461 aa12.12□□□□□ -0.47
GPNMB-211ENST00000479625 ASCC2Q9H1I8 757 aaPredicted RBP12.12□□□□□ -0.47
GPNMB-211ENST00000479625 MYO5AQ9Y4I1 1855 aaKnown RBP12.11□□□□□ -0.47
GPNMB-211ENST00000479625 CCND3P30281 292 aaPredicted RBP12.11□□□□□ -0.47
GPNMB-211ENST00000479625 BTDP43251 543 aa12.11□□□□□ -0.47
GPNMB-211ENST00000479625 GCLCP48506 637 aaPredicted RBP12.11□□□□□ -0.47
GPNMB-211ENST00000479625 RRP1BQ14684 758 aaKnown RBP12.11□□□□□ -0.47
GPNMB-211ENST00000479625 ATP2B3Q16720 1220 aa12.11□□□□□ -0.47
GPNMB-211ENST00000479625 WDR63Q8IWG1 891 aa12.11□□□□□ -0.47
GPNMB-211ENST00000479625 ADORA1P30542 326 aa12.1□□□□□ -0.47
GPNMB-211ENST00000479625 CCL14Q16627 93 aa12.1□□□□□ -0.47
GPNMB-211ENST00000479625 DZIP1Q86YF9 867 aaKnown RBP12.1□□□□□ -0.47
GPNMB-211ENST00000479625 ZNF280CQ8ND82 737 aa12.1□□□□□ -0.47
GPNMB-211ENST00000479625 MORF4L1Q9UBU8 362 aa12.1□□□□□ -0.47
GPNMB-211ENST00000479625 MROH7-TTC4A0A0A0MT08 1334 aa12.1□□□□□ -0.47
GPNMB-211ENST00000479625 CACNB2Q08289 660 aaPredicted RBP12.09□□□□□ -0.47
GPNMB-211ENST00000479625 ZNF697Q5TEC3 545 aa12.09□□□□□ -0.47
GPNMB-211ENST00000479625 FAM109BQ6ICB4 259 aaPredicted RBP12.09□□□□□ -0.47
GPNMB-211ENST00000479625 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.09□□□□□ -0.47
GPNMB-211ENST00000479625 TXNRD2Q9NNW7 524 aa12.09□□□□□ -0.47
GPNMB-211ENST00000479625 DENND2AQ9ULE3 1009 aa12.09□□□□□ -0.47
GPNMB-211ENST00000479625 FAM205CA6NFA0 338 aa12.08□□□□□ -0.48
GPNMB-211ENST00000479625 ZKSCAN1P17029 563 aaPredicted RBP12.08□□□□□ -0.48
GPNMB-211ENST00000479625 RHBDL3P58872 404 aa12.08□□□□□ -0.48
GPNMB-211ENST00000479625 PABPC4Q13310 644 aaKnown RBP eCLIP12.08□□□□□ -0.48
GPNMB-211ENST00000479625 RASGRF1Q13972 1273 aa12.08□□□□□ -0.48
GPNMB-211ENST00000479625 ZNF384Q8TF68 577 aa12.08□□□□□ -0.48
GPNMB-211ENST00000479625 USP44Q9H0E7 712 aa12.08□□□□□ -0.48
GPNMB-211ENST00000479625 PRDM6Q9NQX0 595 aa12.08□□□□□ -0.48
GPNMB-211ENST00000479625 GNL3LQ9NVN8 582 aaKnown RBP12.08□□□□□ -0.48
GPNMB-211ENST00000479625 ABCF2Q9UG63 623 aa12.08□□□□□ -0.48
GPNMB-211ENST00000479625 SEMA3EO15041 775 aa12.07□□□□□ -0.48
GPNMB-211ENST00000479625 IRX3P78415 501 aaPredicted RBP12.07□□□□□ -0.48
GPNMB-211ENST00000479625 MTMR2Q13614 643 aa12.07□□□□□ -0.48
GPNMB-211ENST00000479625 SHROOM1Q2M3G4 852 aaPredicted RBP12.07□□□□□ -0.48
GPNMB-211ENST00000479625 CCDC102BQ68D86 513 aa12.07□□□□□ -0.48
GPNMB-211ENST00000479625 MAFAQ8NHW3 353 aaPredicted RBP12.07□□□□□ -0.48
GPNMB-211ENST00000479625 SOCS4Q8WXH5 440 aa12.07□□□□□ -0.48
GPNMB-211ENST00000479625 CDX2Q99626 313 aaPredicted RBP12.07□□□□□ -0.48
GPNMB-211ENST00000479625 NUDT12Q9BQG2 462 aa12.07□□□□□ -0.48
GPNMB-211ENST00000479625 OSBPL5Q9H0X9 879 aaPredicted RBP12.07□□□□□ -0.48
GPNMB-211ENST00000479625 PORCNQ9H237 461 aa12.07□□□□□ -0.48
GPNMB-211ENST00000479625 MYH1P12882 1939 aa12.06□□□□□ -0.48
GPNMB-211ENST00000479625 TBC1D12O60347 775 aa12.06□□□□□ -0.48
GPNMB-211ENST00000479625 PPP1R37O75864 691 aa12.06□□□□□ -0.48
GPNMB-211ENST00000479625 CAP2P40123 477 aa12.06□□□□□ -0.48
GPNMB-211ENST00000479625 HERVK_113P62684 666 aa12.06□□□□□ -0.48
GPNMB-211ENST00000479625 JAG1P78504 1218 aa12.06□□□□□ -0.48
GPNMB-211ENST00000479625 MECOMQ03112 1051 aa12.06□□□□□ -0.48
GPNMB-211ENST00000479625 SH3D19Q5HYK7 790 aa12.06□□□□□ -0.48
GPNMB-211ENST00000479625 ZGPATQ8N5A5 531 aaKnown RBP12.06□□□□□ -0.48
GPNMB-211ENST00000479625 MRPL50Q8N5N7 158 aaKnown RBP12.06□□□□□ -0.48
GPNMB-211ENST00000479625 MYLIPQ8WY64 445 aa12.06□□□□□ -0.48
GPNMB-211ENST00000479625 USP6NLQ92738 828 aa12.06□□□□□ -0.48
GPNMB-211ENST00000479625 P2RX7Q99572 595 aaKnown RBP12.06□□□□□ -0.48
GPNMB-211ENST00000479625 LBHD1Q9BQE6 289 aaPredicted RBP12.06□□□□□ -0.48
GPNMB-211ENST00000479625 PA2G4Q9UQ80 394 aaKnown RBP12.06□□□□□ -0.48
GPNMB-211ENST00000479625 TTC28Q96AY4 2481 aa12.05□□□□□ -0.48
GPNMB-211ENST00000479625 ZNF236Q9UL36 1845 aa12.05□□□□□ -0.48
GPNMB-211ENST00000479625 USP17L5A8MUK1 530 aa12.05□□□□□ -0.48
GPNMB-211ENST00000479625 XRCC5P13010 732 aaKnown RBP12.05□□□□□ -0.48
GPNMB-211ENST00000479625 PDE3AQ14432 1141 aa12.05□□□□□ -0.48
GPNMB-211ENST00000479625 C9orf50Q5SZB4 431 aa12.05□□□□□ -0.48
GPNMB-211ENST00000479625 POTEEQ6S8J3 1075 aa12.05□□□□□ -0.48
GPNMB-211ENST00000479625 HS3ST6Q96QI5 342 aa12.05□□□□□ -0.48
GPNMB-211ENST00000479625 PAGR1Q9BTK6 254 aa12.05□□□□□ -0.48
GPNMB-211ENST00000479625 SENP6Q9GZR1 1112 aaPredicted RBP12.05□□□□□ -0.48
GPNMB-211ENST00000479625 CEP126Q9P2H0 1117 aa12.05□□□□□ -0.48
GPNMB-211ENST00000479625 A0A0G2JMZ2 1700 aa12.04□□□□□ -0.48
GPNMB-211ENST00000479625 REV3LO60673 3130 aa12.04□□□□□ -0.48
GPNMB-211ENST00000479625 GPR75-ASB3A0A0A6YYF3 556 aa12.04□□□□□ -0.48
GPNMB-211ENST00000479625 CIAO1O76071 339 aa12.04□□□□□ -0.48
GPNMB-211ENST00000479625 RGS2P41220 211 aa12.04□□□□□ -0.48
GPNMB-211ENST00000479625 ERVK-9P63128 1117 aa12.04□□□□□ -0.48
GPNMB-211ENST00000479625 ERVK-24P63145 666 aa12.04□□□□□ -0.48
GPNMB-211ENST00000479625 SHHQ15465 462 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms