RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TNPO2O14787 897 aaKnown RBP14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 SGPL1O95470 568 aa14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 CAPN2P17655 700 aa14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 PABPC4Q13310 644 aaKnown RBP eCLIP14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 POTEEQ6S8J3 1075 aa14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 ERC1Q8IUD2 1116 aa14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 SIRT2Q8IXJ6 389 aa14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 U2AF1L4Q8WU68 220 aaKnown RBP14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 UNC93B1Q9H1C4 597 aa14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 PAK6Q9NQU5 681 aaPredicted RBP14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 ZBTB40Q9NUA8 1239 aa14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 NDUFB9Q9Y6M9 179 aa14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 SZT2Q5T011 3432 aa14.96□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 IDH1O75874 414 aaKnown RBP14.95□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 ELNP15502 786 aa14.95□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 MTMR2Q13614 643 aa14.95□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 MAGEB6Q8N7X4 407 aa14.95□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 RHPN1Q8TCX5 695 aa14.95□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 COA7Q96BR5 231 aa14.95□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 P2RX7Q99572 595 aaKnown RBP14.95□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 RIOK1Q9BRS2 568 aaKnown RBP14.95□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 EHD4Q9H223 541 aa14.95□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 ZBTB21Q9ULJ3 1066 aa14.95□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 USP17L10C9JJH3 530 aa14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 H0YGN5 161 aa14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 INHAP05111 366 aa14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 HSP90AB4PQ58FF6 505 aa14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 AACSQ86V21 672 aa14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 RPAP2Q8IXW5 612 aaPredicted RBP14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 MIGA1Q8NAN2 632 aa14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 CRISPLD2Q9H0B8 497 aa14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 TXNRD2Q9NNW7 524 aa14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 EMILIN3Q9NT22 766 aa14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 BIN2Q9UBW5 565 aaPredicted RBP14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 SAP30BPQ9UHR5 308 aaKnown RBP14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 DDX60LQ5H9U9 1706 aaKnown RBP14.94□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 GDF11O95390 407 aa14.93□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 MS4A1P11836 297 aa14.93□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 MAP3K12Q12852 859 aa14.93□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 RBPJLQ9UBG7 517 aa14.93□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 COLQQ9Y215 455 aaPredicted RBP14.93□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 HLA-DOAP06340 250 aa14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 FXR1P51114 621 aaKnown RBP eCLIP14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 GABPAQ06546 454 aa14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 Q3C1V9 767 aa14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 CRACR2BQ8N4Y2 399 aaPredicted RBP14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 USP6NLQ92738 828 aa14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 KIF1BPQ96EK5 621 aa14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 C12orf42Q96LP6 360 aa14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 PRO3102Q9H379 93 aa14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 IL1RAPL2Q9NP60 686 aa14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 SERPINB13Q9UIV8 391 aa14.92□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 TCRBV5S4A2TA0A5A2 114 aa14.91□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 PEX10O60683 326 aa14.91□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 GH2P01242 217 aa14.91□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 PLCD1P51178 756 aa14.91□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 HERVK_113P62684 666 aa14.91□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 TMOD4Q9NZQ9 345 aa14.91□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 DDX19BQ9UMR2 479 aa14.91□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 ALPK3Q96L96 1907 aa14.91□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 XRCC5P13010 732 aaKnown RBP14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 PDE6AP16499 860 aa14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 GUCY1A2P33402 732 aa14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 SHMT1P34896 483 aa14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 USP5P45974 858 aa14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 IRX3P78415 501 aaPredicted RBP14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 TTF1Q15361 905 aaPredicted RBP14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 MAP3K21Q5TCX8 1036 aa14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 USP17L2Q6R6M4 530 aa14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 TTC6Q86TZ1 520 aa14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 GPRC5AQ8NFJ5 357 aa14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 DEFB118Q96PH6 123 aa14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 COG6Q9Y2V7 657 aa14.9□□□□□ -0.02
MSH5-SAPCD1-205ENST00000476085 RAB11FIP3O75154 756 aa14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 FARP2O94887 1054 aaPredicted RBP14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 HMGCRP04035 888 aa14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 MNX1P50219 401 aaPredicted RBP14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 ERVK-9P63128 1117 aa14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 ERVK-24P63145 666 aa14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 TRIM32Q13049 653 aa14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 CLASRPQ8N2M8 674 aaKnown RBP14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 HTATIP2Q9BUP3 242 aa14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 TRIM34Q9BYJ4 488 aa14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 KIAA1683Q9H0B3 1180 aa14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 RPTORQ8N122 1335 aa14.89□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 RLFQ13129 1914 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 CNMDO75829 334 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 EVX2Q03828 476 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 CERKLQ49MI3 558 aaPredicted RBP14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 MORN1Q5T089 497 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 SLC9C2Q5TAH2 1124 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 LBX2Q6XYB7 198 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 CATSPERGQ6ZRH7 1159 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 GTF3C2Q8WUA4 911 aaPredicted RBP14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 TRIB2Q92519 343 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 DPF3Q92784 378 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 PORCNQ9H237 461 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 NAV1Q8NEY1 1877 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms