RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 GCC1Q96CN9 775 aa18.31■□□□□ 0.52
VARS-223ENST00000474643 LRRCC1Q9C099 1032 aa18.31■□□□□ 0.52
VARS-223ENST00000474643 ANTXR1Q9H6X2 564 aa18.31■□□□□ 0.52
VARS-223ENST00000474643 CWC22Q9HCG8 908 aaKnown RBP18.31■□□□□ 0.52
VARS-223ENST00000474643 GINM1Q9NU53 330 aa18.31■□□□□ 0.52
VARS-223ENST00000474643 PCDHB15Q9Y5E8 787 aa18.31■□□□□ 0.52
VARS-223ENST00000474643 KIAA0100Q14667 2235 aaKnown RBP18.31■□□□□ 0.52
VARS-223ENST00000474643 PTPRFP10586 1907 aa18.3■□□□□ 0.52
VARS-223ENST00000474643 MAGEB6P1A0A0J9YX57 407 aa18.3■□□□□ 0.52
VARS-223ENST00000474643 GOLIM4O00461 696 aa18.3■□□□□ 0.52
VARS-223ENST00000474643 ADCY3O60266 1144 aa18.3■□□□□ 0.52
VARS-223ENST00000474643 POLR3DP05423 398 aaPredicted RBP18.3■□□□□ 0.52
VARS-223ENST00000474643 FAM110CQ1W6H9 321 aa18.3■□□□□ 0.52
VARS-223ENST00000474643 SLC9C2Q5TAH2 1124 aa18.3■□□□□ 0.52
VARS-223ENST00000474643 CRNKL1Q9BZJ0 848 aaKnown RBP18.3■□□□□ 0.52
VARS-223ENST00000474643 RNF208Q9H0X6 261 aa18.3■□□□□ 0.52
VARS-223ENST00000474643 ZBTB21Q9ULJ3 1066 aa18.3■□□□□ 0.52
VARS-223ENST00000474643 PHIPQ8WWQ0 1821 aa18.3■□□□□ 0.52
VARS-223ENST00000474643 USP17L10C9JJH3 530 aa18.29■□□□□ 0.52
VARS-223ENST00000474643 CCL5P13501 91 aa18.29■□□□□ 0.52
VARS-223ENST00000474643 FLT3LGP49771 235 aa18.29■□□□□ 0.52
VARS-223ENST00000474643 BACE1P56817 501 aa18.29■□□□□ 0.52
VARS-223ENST00000474643 AAMPQ13685 434 aa18.29■□□□□ 0.52
VARS-223ENST00000474643 MTFR1Q15390 333 aa18.29■□□□□ 0.52
VARS-223ENST00000474643 WDR18Q9BV38 432 aa18.29■□□□□ 0.52
VARS-223ENST00000474643 ASCC2Q9H1I8 757 aaPredicted RBP18.29■□□□□ 0.52
VARS-223ENST00000474643 ZBTB47Q9UFB7 747 aaPredicted RBP18.29■□□□□ 0.52
VARS-223ENST00000474643 SERPINB13Q9UIV8 391 aa18.29■□□□□ 0.52
VARS-223ENST00000474643 GABRQQ9UN88 632 aa18.29■□□□□ 0.52
VARS-223ENST00000474643 C19orf81C9J6K1 198 aa18.28■□□□□ 0.52
VARS-223ENST00000474643 RRP1BQ14684 758 aaKnown RBP18.28■□□□□ 0.52
VARS-223ENST00000474643 RAB3GAP1Q15042 981 aa18.28■□□□□ 0.52
VARS-223ENST00000474643 EXOC6Q8TAG9 804 aa18.28■□□□□ 0.52
VARS-223ENST00000474643 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.28■□□□□ 0.526e-7■■■■□ 20.7
VARS-223ENST00000474643 DCTPP1Q9H773 170 aa18.28■□□□□ 0.52
VARS-223ENST00000474643 CABP5Q9NP86 173 aa18.28■□□□□ 0.52
VARS-223ENST00000474643 MYO5AQ9Y4I1 1855 aaKnown RBP18.28■□□□□ 0.52
VARS-223ENST00000474643 MKI67P46013 3256 aaKnown RBP18.27■□□□□ 0.52
VARS-223ENST00000474643 SMARCA5O60264 1052 aaPredicted RBP18.27■□□□□ 0.52
VARS-223ENST00000474643 GH2P01242 217 aa18.27■□□□□ 0.52
VARS-223ENST00000474643 IRX6P78412 446 aaPredicted RBP18.27■□□□□ 0.52
VARS-223ENST00000474643 ZYXQ15942 572 aaKnown RBP18.27■□□□□ 0.52
VARS-223ENST00000474643 SH3D19Q5HYK7 790 aa18.27■□□□□ 0.52
VARS-223ENST00000474643 AMOTL1Q8IY63 956 aa18.27■□□□□ 0.52
VARS-223ENST00000474643 DNAJC18Q9H819 358 aa18.27■□□□□ 0.52
VARS-223ENST00000474643 FOCADQ5VW36 1801 aa18.27■□□□□ 0.52
VARS-223ENST00000474643 LOC285556D6RIA3 1793 aa18.27■□□□□ 0.51
VARS-223ENST00000474643 MPHOSPH10O00566 681 aaKnown RBP18.26■□□□□ 0.51
VARS-223ENST00000474643 ELNP15502 786 aa18.26■□□□□ 0.51
VARS-223ENST00000474643 PDE6AP16499 860 aa18.26■□□□□ 0.51
VARS-223ENST00000474643 CERKLQ49MI3 558 aaPredicted RBP18.26■□□□□ 0.51
VARS-223ENST00000474643 METTL16Q86W50 562 aaKnown RBP18.26■□□□□ 0.51
VARS-223ENST00000474643 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.26■□□□□ 0.51
VARS-223ENST00000474643 DDRGK1Q96HY6 314 aa18.26■□□□□ 0.51
VARS-223ENST00000474643 MCM9Q9NXL9 1143 aa18.26■□□□□ 0.51
VARS-223ENST00000474643 MGAMO43451 1857 aa18.26■□□□□ 0.51
VARS-223ENST00000474643 ZNF532Q9HCE3 1301 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 CDK5RAP2Q96SN8 1893 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 SLC34A2O95436 690 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 INHAP05111 366 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 ABCB5Q2M3G0 1257 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 USP17L2Q6R6M4 530 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 PAGR1Q9BTK6 254 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 EHD4Q9H223 541 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 BOLA2Q9H3K6 86 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 PAG1Q9NWQ8 432 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 MYH1P12882 1939 aa18.25■□□□□ 0.51
VARS-223ENST00000474643 SIPA1L1O43166 1804 aa18.24■□□□□ 0.51
VARS-223ENST00000474643 GJB1P08034 283 aa18.24■□□□□ 0.51
VARS-223ENST00000474643 PXYLP1Q8TE99 480 aa18.24■□□□□ 0.51
VARS-223ENST00000474643 GTF3C2Q8WUA4 911 aaPredicted RBP18.24■□□□□ 0.51
VARS-223ENST00000474643 DPF3Q92784 378 aa18.24■□□□□ 0.51
VARS-223ENST00000474643 GPATCH3Q96I76 525 aa18.24■□□□□ 0.51
VARS-223ENST00000474643 TFRCP02786 760 aaKnown RBP18.23■□□□□ 0.51
VARS-223ENST00000474643 USP14P54578 494 aa18.23■□□□□ 0.51
VARS-223ENST00000474643 HERVK_113P62684 666 aa18.23■□□□□ 0.51
VARS-223ENST00000474643 IRF5Q13568 498 aa18.23■□□□□ 0.51
VARS-223ENST00000474643 SHROOM1Q2M3G4 852 aaPredicted RBP18.23■□□□□ 0.51
VARS-223ENST00000474643 GPRC5AQ8NFJ5 357 aa18.23■□□□□ 0.51
VARS-223ENST00000474643 HTATIP2Q9BUP3 242 aa18.23■□□□□ 0.51
VARS-223ENST00000474643 UNC93B1Q9H1C4 597 aa18.23■□□□□ 0.51
VARS-223ENST00000474643 RWDD1Q9H446 243 aaPredicted RBP18.23■□□□□ 0.51
VARS-223ENST00000474643 HOXA7P31268 230 aaPredicted RBP18.22■□□□□ 0.51
VARS-223ENST00000474643 GJA8P48165 433 aa18.22■□□□□ 0.51
VARS-223ENST00000474643 JAG1P78504 1218 aa18.22■□□□□ 0.51
VARS-223ENST00000474643 ZSCAN25Q6NSZ9 544 aa18.22■□□□□ 0.51
VARS-223ENST00000474643 TATDN1Q6P1N9 297 aa18.22■□□□□ 0.51
VARS-223ENST00000474643 U2AF1L4Q8WU68 220 aaKnown RBP18.22■□□□□ 0.51
VARS-223ENST00000474643 P2RX7Q99572 595 aaKnown RBP18.22■□□□□ 0.51
VARS-223ENST00000474643 RIOK1Q9BRS2 568 aaKnown RBP18.22■□□□□ 0.51
VARS-223ENST00000474643 NAV1Q8NEY1 1877 aa18.22■□□□□ 0.51
VARS-223ENST00000474643 ATP5JP18859 108 aa18.21■□□□□ 0.51
VARS-223ENST00000474643 HDAC1Q13547 482 aaPredicted RBP18.21■□□□□ 0.51
VARS-223ENST00000474643 WDR78Q5VTH9 848 aa18.21■□□□□ 0.51
VARS-223ENST00000474643 SDR42E1Q8WUS8 393 aa18.21■□□□□ 0.51
VARS-223ENST00000474643 EDC3Q96F86 508 aaKnown RBP18.21■□□□□ 0.51
VARS-223ENST00000474643 ARMT1Q9H993 441 aa18.21■□□□□ 0.51
VARS-223ENST00000474643 USP17L15C9J2P7 530 aa18.2■□□□□ 0.5
VARS-223ENST00000474643 USP17L13C9JLJ4 530 aa18.2■□□□□ 0.5
VARS-223ENST00000474643 USP17L11C9JVI0 530 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms