RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 MAPK4P31152 587 aa22.78■■□□□ 1.24
SHH-205ENST00000472308 PDE3AQ14432 1141 aa22.78■■□□□ 1.24
SHH-205ENST00000472308 TBC1D9Q6ZT07 1266 aa22.78■■□□□ 1.24
SHH-205ENST00000472308 GPR142Q7Z601 462 aa22.78■■□□□ 1.24
SHH-205ENST00000472308 DNAJC18Q9H819 358 aa22.78■■□□□ 1.24
SHH-205ENST00000472308 RGS2P41220 211 aa22.77■■□□□ 1.24
SHH-205ENST00000472308 ERVK-9P63128 1117 aa22.77■■□□□ 1.24
SHH-205ENST00000472308 ERVK-24P63145 666 aa22.77■■□□□ 1.24
SHH-205ENST00000472308 APBA2Q99767 749 aa22.77■■□□□ 1.24
SHH-205ENST00000472308 TMOD4Q9NZQ9 345 aa22.77■■□□□ 1.24
SHH-205ENST00000472308 TFCP2Q12800 502 aa22.76■■□□□ 1.23
SHH-205ENST00000472308 MVPQ14764 893 aaKnown RBP22.76■■□□□ 1.23
SHH-205ENST00000472308 TEX11Q8IYF3 940 aa22.76■■□□□ 1.23
SHH-205ENST00000472308 SH3RF3Q8TEJ3 882 aaPredicted RBP22.76■■□□□ 1.23
SHH-205ENST00000472308 ASNSP08243 561 aa22.75■■□□□ 1.23
SHH-205ENST00000472308 GSTO1P78417 241 aa22.75■■□□□ 1.23
SHH-205ENST00000472308 FAM9BQ8IZU0 186 aa22.75■■□□□ 1.23
SHH-205ENST00000472308 SPATA5Q8NB90 893 aa22.75■■□□□ 1.23
SHH-205ENST00000472308 PI4KBQ9UBF8 816 aa22.75■■□□□ 1.23
SHH-205ENST00000472308 LTBP2Q14767 1821 aa22.75■■□□□ 1.23
SHH-205ENST00000472308 LDHCP07864 332 aa22.74■■□□□ 1.23
SHH-205ENST00000472308 PLEKHH3Q7Z736 793 aa22.74■■□□□ 1.23
SHH-205ENST00000472308 PAGR1Q9BTK6 254 aa22.74■■□□□ 1.23
SHH-205ENST00000472308 SENP6Q9GZR1 1112 aaPredicted RBP22.74■■□□□ 1.23
SHH-205ENST00000472308 FLRT1Q9NZU1 646 aa22.74■■□□□ 1.23
SHH-205ENST00000472308 C19orf81C9J6K1 198 aa22.73■■□□□ 1.23
SHH-205ENST00000472308 METTL16Q86W50 562 aaKnown RBP22.73■■□□□ 1.23
SHH-205ENST00000472308 LBHD1Q9BQE6 289 aaPredicted RBP22.73■■□□□ 1.23
SHH-205ENST00000472308 EMILIN3Q9NT22 766 aa22.73■■□□□ 1.23
SHH-205ENST00000472308 RAI14Q9P0K7 980 aa22.73■■□□□ 1.23
SHH-205ENST00000472308 USP17L10C9JJH3 530 aa22.72■■□□□ 1.23
SHH-205ENST00000472308 GDF11O95390 407 aa22.72■■□□□ 1.23
SHH-205ENST00000472308 ALDH1L2Q3SY69 923 aa22.72■■□□□ 1.23
SHH-205ENST00000472308 ZNF697Q5TEC3 545 aa22.72■■□□□ 1.23
SHH-205ENST00000472308 CDX2Q99626 313 aaPredicted RBP22.72■■□□□ 1.23
SHH-205ENST00000472308 MEIS3Q99687 375 aa22.72■■□□□ 1.23
SHH-205ENST00000472308 DHX36Q9H2U1 1008 aaKnown RBP22.72■■□□□ 1.23
SHH-205ENST00000472308 ZBTB21Q9ULJ3 1066 aa22.72■■□□□ 1.23
SHH-205ENST00000472308 AKAP2Q9Y2D5 859 aa22.72■■□□□ 1.23
SHH-205ENST00000472308 TTC28Q96AY4 2481 aa22.72■■□□□ 1.23
SHH-205ENST00000472308 CNMDO75829 334 aa22.71■■□□□ 1.23
SHH-205ENST00000472308 ARID4AP29374 1257 aaPredicted RBP22.71■■□□□ 1.23
SHH-205ENST00000472308 ATN1P54259 1190 aaPredicted RBP22.71■■□□□ 1.23
SHH-205ENST00000472308 MAP2K5Q13163 448 aa22.71■■□□□ 1.23
SHH-205ENST00000472308 SMC4Q9NTJ3 1288 aa22.71■■□□□ 1.23
SHH-205ENST00000472308 MCAMP43121 646 aa22.7■■□□□ 1.22
SHH-205ENST00000472308 CCAR1Q8IX12 1150 aaKnown RBP22.7■■□□□ 1.22
SHH-205ENST00000472308 GTF3C2Q8WUA4 911 aaPredicted RBP22.7■■□□□ 1.22
SHH-205ENST00000472308 DDX20Q9UHI6 824 aaKnown RBP22.7■■□□□ 1.22
SHH-205ENST00000472308 NDUFB9Q9Y6M9 179 aa22.7■■□□□ 1.22
SHH-205ENST00000472308 FLT1P17948 1338 aa22.69■■□□□ 1.22
SHH-205ENST00000472308 E9PSI1 815 aa22.69■■□□□ 1.22
SHH-205ENST00000472308 MAPKAPK5Q8IW41 473 aa22.69■■□□□ 1.22
SHH-205ENST00000472308 MAFAQ8NHW3 353 aaPredicted RBP22.69■■□□□ 1.22
SHH-205ENST00000472308 NEUROD6Q96NK8 337 aa22.69■■□□□ 1.22
SHH-205ENST00000472308 AATFQ9NY61 560 aaKnown RBP eCLIP22.69■■□□□ 1.22
SHH-205ENST00000472308 ANP32CO43423 234 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 RTP1P59025 263 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 SHHQ15465 462 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 C9orf50Q5SZB4 431 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 ADGRA1Q86SQ6 560 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 TRPV1Q8NER1 839 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 TGFBRAP1Q8WUH2 860 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 LPAR1Q92633 364 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 EDC3Q96F86 508 aaKnown RBP22.68■■□□□ 1.22
SHH-205ENST00000472308 SEMA6BQ9H3T3 888 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 GINM1Q9NU53 330 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 CDK5RAP2Q96SN8 1893 aa22.68■■□□□ 1.22
SHH-205ENST00000472308 FOCADQ5VW36 1801 aa22.67■■□□□ 1.22
SHH-205ENST00000472308 DNM1LO00429 736 aa22.67■■□□□ 1.22
SHH-205ENST00000472308 SRGAP3O43295 1099 aa22.67■■□□□ 1.22
SHH-205ENST00000472308 IGHA2P01877 340 aa22.67■■□□□ 1.22
SHH-205ENST00000472308 SLFN5Q08AF3 891 aa22.67■■□□□ 1.22
SHH-205ENST00000472308 MFSD14CQ5VZR4 134 aa22.67■■□□□ 1.22
SHH-205ENST00000472308 PRDM6Q9NQX0 595 aa22.67■■□□□ 1.22
SHH-205ENST00000472308 PALD1Q9ULE6 856 aa22.67■■□□□ 1.22
SHH-205ENST00000472308 RABGAP1Q9Y3P9 1069 aa22.67■■□□□ 1.22
SHH-205ENST00000472308 HOXC6P09630 235 aa22.66■■□□□ 1.22
SHH-205ENST00000472308 MTX1Q13505 466 aa22.66■■□□□ 1.22
SHH-205ENST00000472308 USP17L2Q6R6M4 530 aa22.66■■□□□ 1.22
SHH-205ENST00000472308 FOXP4Q8IVH2 680 aaPredicted RBP22.66■■□□□ 1.22
SHH-205ENST00000472308 C12orf42Q96LP6 360 aa22.66■■□□□ 1.22
SHH-205ENST00000472308 TTYH1Q9H313 450 aaPredicted RBP22.66■■□□□ 1.22
SHH-205ENST00000472308 LRP2BPQ9P2M1 347 aa22.66■■□□□ 1.22
SHH-205ENST00000472308 NOB1Q9ULX3 412 aaKnown RBP22.66■■□□□ 1.22
SHH-205ENST00000472308 HDAC5Q9UQL6 1122 aa22.66■■□□□ 1.22
SHH-205ENST00000472308 SLC15A5A6NIM6 579 aa22.65■■□□□ 1.22
SHH-205ENST00000472308 PTPREP23469 700 aa22.65■■□□□ 1.22
SHH-205ENST00000472308 CYP2C19P33261 490 aa22.65■■□□□ 1.22
SHH-205ENST00000472308 PPP4CP60510 307 aa22.65■■□□□ 1.22
SHH-205ENST00000472308 CRACR2BQ8N4Y2 399 aaPredicted RBP22.65■■□□□ 1.22
SHH-205ENST00000472308 NPLOC4Q8TAT6 608 aa22.65■■□□□ 1.22
SHH-205ENST00000472308 CWC22Q9HCG8 908 aaKnown RBP22.65■■□□□ 1.22
SHH-205ENST00000472308 PRKAG2Q9UGJ0 569 aa22.65■■□□□ 1.22
SHH-205ENST00000472308 RLFQ13129 1914 aa22.65■■□□□ 1.22
SHH-205ENST00000472308 MSCO60682 206 aa22.64■■□□□ 1.21
SHH-205ENST00000472308 GRB14Q14449 540 aa22.64■■□□□ 1.21
SHH-205ENST00000472308 GORABQ5T7V8 394 aa22.64■■□□□ 1.21
SHH-205ENST00000472308 NAA16Q6N069 864 aaPredicted RBP22.64■■□□□ 1.21
SHH-205ENST00000472308 MYLIPQ8WY64 445 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms