RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 HAUS7Q99871 368 aa16.34■□□□□ 0.21
HMGN1-211ENST00000471260 CRNKL1Q9BZJ0 848 aaKnown RBP16.34■□□□□ 0.21
HMGN1-211ENST00000471260 PAG1Q9NWQ8 432 aa16.34■□□□□ 0.21
HMGN1-211ENST00000471260 TMOD4Q9NZQ9 345 aa16.34■□□□□ 0.21
HMGN1-211ENST00000471260 PDE4DIPQ5VU43 2346 aa16.34■□□□□ 0.21
HMGN1-211ENST00000471260 RBBP6Q7Z6E9 1792 aaKnown RBP16.33■□□□□ 0.21
HMGN1-211ENST00000471260 TCRBV5S4A2TA0A5A2 114 aa16.33■□□□□ 0.2
HMGN1-211ENST00000471260 USP17L10C9JJH3 530 aa16.33■□□□□ 0.2
HMGN1-211ENST00000471260 HOXA7P31268 230 aaPredicted RBP16.33■□□□□ 0.2
HMGN1-211ENST00000471260 FAM110CQ1W6H9 321 aa16.33■□□□□ 0.2
HMGN1-211ENST00000471260 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.33■□□□□ 0.2
HMGN1-211ENST00000471260 BOLA2Q9H3K6 86 aa16.33■□□□□ 0.2
HMGN1-211ENST00000471260 PPP4R2Q9NY27 417 aa16.33■□□□□ 0.2
HMGN1-211ENST00000471260 ZBTB21Q9ULJ3 1066 aa16.33■□□□□ 0.2
HMGN1-211ENST00000471260 MYPNQ86TC9 1320 aa16.33■□□□□ 0.2
HMGN1-211ENST00000471260 ZNF532Q9HCE3 1301 aa16.33■□□□□ 0.2
HMGN1-211ENST00000471260 CENPFP49454 3210 aa16.33■□□□□ 0.2
HMGN1-211ENST00000471260 MYH1P12882 1939 aa16.33■□□□□ 0.2
HMGN1-211ENST00000471260 LOC285556D6RIA3 1793 aa16.32■□□□□ 0.2
HMGN1-211ENST00000471260 GRK4P32298 578 aa16.32■□□□□ 0.2
HMGN1-211ENST00000471260 SLC4A8Q2Y0W8 1093 aa16.32■□□□□ 0.2
HMGN1-211ENST00000471260 DCTPP1Q9H773 170 aa16.32■□□□□ 0.2
HMGN1-211ENST00000471260 GDF11O95390 407 aa16.31■□□□□ 0.2
HMGN1-211ENST00000471260 POLR3DP05423 398 aaPredicted RBP16.31■□□□□ 0.2
HMGN1-211ENST00000471260 ADD2P35612 726 aa16.31■□□□□ 0.2
HMGN1-211ENST00000471260 JAG1P78504 1218 aa16.31■□□□□ 0.2
HMGN1-211ENST00000471260 MTMR2Q13614 643 aa16.31■□□□□ 0.2
HMGN1-211ENST00000471260 ZSCAN25Q6NSZ9 544 aa16.31■□□□□ 0.2
HMGN1-211ENST00000471260 ANKRD13CQ8N6S4 541 aa16.31■□□□□ 0.2
HMGN1-211ENST00000471260 SH3TC2Q8TF17 1288 aa16.31■□□□□ 0.2
HMGN1-211ENST00000471260 ASCC2Q9H1I8 757 aaPredicted RBP16.31■□□□□ 0.2
HMGN1-211ENST00000471260 ZSWIM8A7E2V4 1837 aa16.31■□□□□ 0.2
HMGN1-211ENST00000471260 TNPO2O14787 897 aaKnown RBP16.3■□□□□ 0.2
HMGN1-211ENST00000471260 PRKCZQ05513 592 aa16.3■□□□□ 0.2
HMGN1-211ENST00000471260 IRF5Q13568 498 aa16.3■□□□□ 0.2
HMGN1-211ENST00000471260 UBE3CQ15386 1083 aa16.3■□□□□ 0.2
HMGN1-211ENST00000471260 CERKLQ49MI3 558 aaPredicted RBP16.3■□□□□ 0.2
HMGN1-211ENST00000471260 PRPF38BQ5VTL8 546 aaKnown RBP16.3■□□□□ 0.2
HMGN1-211ENST00000471260 SLAIN1Q8ND83 568 aa16.3■□□□□ 0.2
HMGN1-211ENST00000471260 COA7Q96BR5 231 aa16.3■□□□□ 0.2
HMGN1-211ENST00000471260 BCL11AQ9H165 835 aa16.3■□□□□ 0.2
HMGN1-211ENST00000471260 CABP5Q9NP86 173 aa16.3■□□□□ 0.2
HMGN1-211ENST00000471260 ATP8A2Q9NTI2 1148 aa16.3■□□□□ 0.2
HMGN1-211ENST00000471260 MCM9Q9NXL9 1143 aa16.3■□□□□ 0.2
HMGN1-211ENST00000471260 MGAMO43451 1857 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 ECM2O94769 699 aaPredicted RBP16.29■□□□□ 0.2
HMGN1-211ENST00000471260 GH2P01242 217 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 EN2P19622 333 aaPredicted RBP16.29■□□□□ 0.2
HMGN1-211ENST00000471260 PLCD1P51178 756 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 UBXN2AP68543 259 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 IRX3P78415 501 aaPredicted RBP16.29■□□□□ 0.2
HMGN1-211ENST00000471260 GABPAQ06546 454 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 USP17L2Q6R6M4 530 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 NKX2-3Q8TAU0 364 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 PXYLP1Q8TE99 480 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 GTF3C2Q8WUA4 911 aaPredicted RBP16.29■□□□□ 0.2
HMGN1-211ENST00000471260 EDC3Q96F86 508 aaKnown RBP16.29■□□□□ 0.2
HMGN1-211ENST00000471260 GPATCH3Q96I76 525 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 DCP1AQ9NPI6 582 aaPredicted RBP16.29■□□□□ 0.2
HMGN1-211ENST00000471260 ECHDC1Q9NTX5 307 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 MORF4L1Q9UBU8 362 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 BRCA2P51587 3418 aa16.29■□□□□ 0.2
HMGN1-211ENST00000471260 CAPN2P17655 700 aa16.28■□□□□ 0.2
HMGN1-211ENST00000471260 FLT3LGP49771 235 aa16.28■□□□□ 0.2
HMGN1-211ENST00000471260 USP14P54578 494 aa16.28■□□□□ 0.2
HMGN1-211ENST00000471260 ABCB5Q2M3G0 1257 aa16.28■□□□□ 0.2
HMGN1-211ENST00000471260 LCORLQ8N3X6 602 aa16.28■□□□□ 0.2
HMGN1-211ENST00000471260 C12orf42Q96LP6 360 aa16.28■□□□□ 0.2
HMGN1-211ENST00000471260 SWAP70Q9UH65 585 aa16.28■□□□□ 0.2
HMGN1-211ENST00000471260 GABRQQ9UN88 632 aa16.28■□□□□ 0.2
HMGN1-211ENST00000471260 SMARCA5O60264 1052 aaPredicted RBP16.27■□□□□ 0.2
HMGN1-211ENST00000471260 ADCY3O60266 1144 aa16.27■□□□□ 0.2
HMGN1-211ENST00000471260 SHMT1P34896 483 aa16.27■□□□□ 0.2
HMGN1-211ENST00000471260 SDR42E1Q8WUS8 393 aa16.27■□□□□ 0.2
HMGN1-211ENST00000471260 KIAA1683Q9H0B3 1180 aa16.27■□□□□ 0.2
HMGN1-211ENST00000471260 EMILIN3Q9NT22 766 aa16.27■□□□□ 0.2
HMGN1-211ENST00000471260 TNRC18O15417 2968 aaPredicted RBP16.27■□□□□ 0.19
HMGN1-211ENST00000471260 DDX60LQ5H9U9 1706 aaKnown RBP16.26■□□□□ 0.19
HMGN1-211ENST00000471260 RRP1P56182 461 aaKnown RBP16.26■□□□□ 0.19
HMGN1-211ENST00000471260 RAB3GAP1Q15042 981 aa16.26■□□□□ 0.19
HMGN1-211ENST00000471260 SHROOM1Q2M3G4 852 aaPredicted RBP16.26■□□□□ 0.19
HMGN1-211ENST00000471260 AMOTL1Q8IY63 956 aa16.26■□□□□ 0.19
HMGN1-211ENST00000471260 DDRGK1Q96HY6 314 aa16.26■□□□□ 0.19
HMGN1-211ENST00000471260 P2RX7Q99572 595 aaKnown RBP16.26■□□□□ 0.19
HMGN1-211ENST00000471260 ARMT1Q9H993 441 aa16.26■□□□□ 0.19
HMGN1-211ENST00000471260 BIN2Q9UBW5 565 aaPredicted RBP16.26■□□□□ 0.19
HMGN1-211ENST00000471260 GJB1P08034 283 aa16.25■□□□□ 0.19
HMGN1-211ENST00000471260 HERVK_113P62684 666 aa16.25■□□□□ 0.19
HMGN1-211ENST00000471260 MTFR1Q15390 333 aa16.25■□□□□ 0.19
HMGN1-211ENST00000471260 GPRC5AQ8NFJ5 357 aa16.25■□□□□ 0.19
HMGN1-211ENST00000471260 FEZ1Q99689 392 aa16.25■□□□□ 0.19
HMGN1-211ENST00000471260 NAV1Q8NEY1 1877 aa16.25■□□□□ 0.19
HMGN1-211ENST00000471260 USP17L15C9J2P7 530 aa16.24■□□□□ 0.19
HMGN1-211ENST00000471260 USP17L13C9JLJ4 530 aa16.24■□□□□ 0.19
HMGN1-211ENST00000471260 USP17L11C9JVI0 530 aa16.24■□□□□ 0.19
HMGN1-211ENST00000471260 USP17L18D6R9N7 530 aa16.24■□□□□ 0.19
HMGN1-211ENST00000471260 USP17L22D6RA61 530 aa16.24■□□□□ 0.19
HMGN1-211ENST00000471260 USP17L17D6RBQ6 530 aa16.24■□□□□ 0.19
HMGN1-211ENST00000471260 USP17L19D6RCP7 530 aa16.24■□□□□ 0.19
HMGN1-211ENST00000471260 USP17L20D6RJB6 530 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms