RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 ACPPP15309 386 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 TMPOP42166 694 aaKnown RBP5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 DGKGP49619 791 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 PLEKHO1Q53GL0 409 aaPredicted RBP5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 KIAA0319Q5VV43 1072 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 ZNF417Q8TAU3 575 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 RAPGEF4Q8WZA2 1011 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 PLEKHF1Q96S99 279 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 ZNF587Q96SQ5 575 aaPredicted RBP5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 SETDB2Q96T68 719 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 OSMRQ99650 979 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 ZKSCAN3Q9BRR0 538 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 PBX4Q9BYU1 374 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 RASSF4Q9H2L5 321 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 JPH1Q9HDC5 661 aaPredicted RBP5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 DZANK1Q9NVP4 752 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 LAS1LQ9Y4W2 734 aaKnown RBP5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 NFAT5O94916 1531 aa5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 COL3A1P02461 1466 aaPredicted RBP5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 MARF1Q9Y4F3 1742 aaKnown RBP5.31□□□□□ -1.56
TMEM39A-204ENST00000468545 RTL1A6NKG5 1358 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 CPDO75976 1380 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 KIF24Q5T7B8 1368 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 IGSF1Q8N6C5 1336 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 A0A1W2PP55 124 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 PDE2AO00408 941 aaPredicted RBP5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 HOXB4P17483 251 aaPredicted RBP5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 DCTN1Q14203 1278 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 NFE2L2Q16236 605 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 MTHFSDQ2M296 383 aaKnown RBP5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 TMEM102Q8N9M5 508 aaPredicted RBP5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 EPS8L3Q8TE67 593 aaKnown RBP5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 FBXO41Q8TF61 875 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 GIPC2Q8TF65 315 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 NUDT8Q8WV74 236 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 BHLHE41Q9C0J9 482 aaPredicted RBP5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 SUV39H2Q9H5I1 410 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 RRAGCQ9HB90 399 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 WWC3Q9ULE0 1092 aa5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 COL16A1Q07092 1604 aaPredicted RBP5.3□□□□□ -1.56
TMEM39A-204ENST00000468545 LTN1O94822 1766 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 SPATA31A6Q5VVP1 1343 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 WDR17Q8IZU2 1322 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 CNTNAP5Q8WYK1 1306 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 CAMTA1Q9Y6Y1 1673 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 NFKBIEO00221 500 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 GADD45BO75293 160 aaPredicted RBP5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 GNA15P30679 374 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 AFF1P51825 1210 aaKnown RBP5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 GRIK5Q16478 980 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 CEP135Q66GS9 1140 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 PRPF40BQ6NWY9 871 aaKnown RBP5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 ZNF530Q6P9A1 599 aaPredicted RBP5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 PI16Q6UXB8 463 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 MCM10Q7L590 875 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 UNC5CLQ8IV45 518 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 CACTIN-AS1Q8N1I8 211 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 DDX54Q8TDD1 881 aaKnown RBP5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 RTF1Q92541 710 aaKnown RBP5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 FRMD6Q96NE9 622 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 DUSP9Q99956 384 aaKnown RBP5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 THUMPD2Q9BTF0 503 aaKnown RBP5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 CARD10Q9BWT7 1032 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 EHD4Q9H223 541 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 LIN7BQ9HAP6 207 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 USP21Q9UK80 565 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 TRIM33Q9UPN9 1127 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 SPG7Q9UQ90 795 aa5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 PHRF1Q9P1Y6 1649 aaKnown RBP5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 BLMP54132 1417 aaPredicted RBP5.29□□□□□ -1.56
TMEM39A-204ENST00000468545 ZBED9Q6R2W3 1325 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 SHPRHQ149N8 1683 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 USP54Q70EL1 1684 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 RBM47A0AV96 593 aaKnown RBP5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 PIK3R2O00459 728 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 GIPC1O14908 333 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 IL2RBP14784 551 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 PTPRAP18433 802 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 GRM2Q14416 872 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 AMOTQ4VCS5 1084 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 C1orf141Q5JVX7 400 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 GPAT2Q6NUI2 795 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 MPRIPQ6WCQ1 1025 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 C8orf86Q6ZUL3 223 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 PODNQ7Z5L7 613 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 CCNJLQ8IV13 435 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 BEND7Q8N7W2 519 aaPredicted RBP5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 FOXD4L4Q8WXT5 416 aaPredicted RBP5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 NXPE3Q969Y0 559 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 HHIPQ96QV1 700 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 TCF12Q99081 682 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 SRCIN1Q9C0H9 1055 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 BCL11AQ9H165 835 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 RGPD5Q99666 1765 aa5.28□□□□□ -1.56
TMEM39A-204ENST00000468545 AFF2P51816 1311 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 GNAT3A8MTJ3 354 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 EXOC5O00471 708 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 TRPA1O75762 1119 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 NID1P14543 1247 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms