RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 CERS5Q8N5B7 392 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 FBXW7Q969H0 707 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 TEX11Q8IYF3 940 aa21.19■□□□□ 0.98
COL9A3-205ENST00000466192 SAP30BPQ9UHR5 308 aaKnown RBP21.19■□□□□ 0.98
COL9A3-205ENST00000466192 TSPY2A6NKD2 308 aa21.19■□□□□ 0.98
COL9A3-205ENST00000466192 PLCD1P51178 756 aa21.19■□□□□ 0.98
COL9A3-205ENST00000466192 TROAPQ12815 778 aa21.19■□□□□ 0.98
COL9A3-205ENST00000466192 MYSM1Q5VVJ2 828 aa21.19■□□□□ 0.98
COL9A3-205ENST00000466192 CATIPQ7Z7H3 387 aa21.19■□□□□ 0.98
COL9A3-205ENST00000466192 PDGFDQ9GZP0 370 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-205ENST00000466192 ADAMTSL1Q8N6G6 1762 aa21.18■□□□□ 0.98
COL9A3-205ENST00000466192 PPP2R5BQ15173 497 aa21.18■□□□□ 0.98
COL9A3-205ENST00000466192 MAP3K11Q16584 847 aa21.18■□□□□ 0.98
COL9A3-205ENST00000466192 TRIM22Q8IYM9 498 aa21.18■□□□□ 0.98
COL9A3-205ENST00000466192 PDLIM2Q96JY6 352 aa21.18■□□□□ 0.98
COL9A3-205ENST00000466192 MXD3Q9BW11 206 aa21.18■□□□□ 0.98
COL9A3-205ENST00000466192 TNMDQ9H2S6 317 aa21.18■□□□□ 0.98
COL9A3-205ENST00000466192 RTEL1Q9NZ71 1219 aa21.18■□□□□ 0.98
COL9A3-205ENST00000466192 DAGLAQ9Y4D2 1042 aa21.18■□□□□ 0.98
COL9A3-205ENST00000466192 PLCG2P16885 1265 aa21.17■□□□□ 0.98
COL9A3-205ENST00000466192 AMOTL1Q8IY63 956 aa21.17■□□□□ 0.98
COL9A3-205ENST00000466192 DDX19AQ9NUU7 478 aaKnown RBP21.17■□□□□ 0.98
COL9A3-205ENST00000466192 SUGT1Q9Y2Z0 365 aa21.17■□□□□ 0.98
COL9A3-205ENST00000466192 SCN9AQ15858 1988 aa21.17■□□□□ 0.98
COL9A3-205ENST00000466192 FLT1P17948 1338 aa21.17■□□□□ 0.98
COL9A3-205ENST00000466192 TRIM29Q14134 588 aa21.17■□□□□ 0.98
COL9A3-205ENST00000466192 WASF1Q92558 559 aa21.17■□□□□ 0.98
COL9A3-205ENST00000466192 EYA3Q99504 573 aa21.17■□□□□ 0.98
COL9A3-205ENST00000466192 CLIC4Q9Y696 253 aa21.17■□□□□ 0.98
COL9A3-205ENST00000466192 BAZ2BQ9UIF8 2168 aaKnown RBP21.16■□□□□ 0.98
COL9A3-205ENST00000466192 F8W031 263 aaPredicted RBP21.16■□□□□ 0.98
COL9A3-205ENST00000466192 TFAP4Q01664 338 aa21.16■□□□□ 0.98
COL9A3-205ENST00000466192 RCSD1Q6JBY9 416 aa21.16■□□□□ 0.98
COL9A3-205ENST00000466192 DEFB132Q7Z7B7 95 aa21.16■□□□□ 0.98
COL9A3-205ENST00000466192 CKAP2LQ8IYA6 745 aa21.16■□□□□ 0.98
COL9A3-205ENST00000466192 SLC44A5Q8NCS7 719 aa21.16■□□□□ 0.98
COL9A3-205ENST00000466192 ZNF646O15015 1829 aaPredicted RBP21.16■□□□□ 0.98
COL9A3-205ENST00000466192 DDAH1O94760 285 aa21.16■□□□□ 0.98
COL9A3-205ENST00000466192 DEXIO95424 95 aa21.16■□□□□ 0.98
COL9A3-205ENST00000466192 ME1P48163 572 aa21.16■□□□□ 0.98
COL9A3-205ENST00000466192 FUT2Q10981 343 aa21.16■□□□□ 0.98
COL9A3-205ENST00000466192 IL17RBQ9NRM6 502 aa21.16■□□□□ 0.98
COL9A3-205ENST00000466192 ZNF219Q9P2Y4 722 aaPredicted RBP21.16■□□□□ 0.98
COL9A3-205ENST00000466192 G3V3G9 751 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 CCDC192P0DO97 292 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 CALM1P0DP23 149 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 CALM2P0DP24 149 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 CALM3P0DP25 149 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 DCAF8Q5TAQ9 597 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 CCAR1Q8IX12 1150 aaKnown RBP21.15■□□□□ 0.98
COL9A3-205ENST00000466192 KLHL34Q8N239 644 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 LINC00301Q8NCQ3 95 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 CLSTN2Q9H4D0 955 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 DBNDD1Q9H9R9 158 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 MKNK2Q9HBH9 465 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 POLR3EQ9NVU0 708 aa21.15■□□□□ 0.98
COL9A3-205ENST00000466192 PLEKHA8P1O95397 391 aa21.14■□□□□ 0.98
COL9A3-205ENST00000466192 U2AF2P26368 475 aaKnown RBP eCLIP21.14■□□□□ 0.984e-7■■■□□ 15.2
COL9A3-205ENST00000466192 RNF26Q9BY78 433 aaPredicted RBP21.14■□□□□ 0.98
COL9A3-205ENST00000466192 KCNQ5Q9NR82 932 aa21.14■□□□□ 0.98
COL9A3-205ENST00000466192 TTF2Q9UNY4 1162 aaKnown RBP21.14■□□□□ 0.98
COL9A3-205ENST00000466192 ESPNB1AK53 854 aa21.14■□□□□ 0.97
COL9A3-205ENST00000466192 NT5C2P49902 561 aa21.14■□□□□ 0.97
COL9A3-205ENST00000466192 FBXO41Q8TF61 875 aa21.14■□□□□ 0.97
COL9A3-205ENST00000466192 CNKSR1Q969H4 720 aa21.14■□□□□ 0.97
COL9A3-205ENST00000466192 RBM28Q9NW13 759 aaKnown RBP21.14■□□□□ 0.97
COL9A3-205ENST00000466192 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.13■□□□□ 0.97
COL9A3-205ENST00000466192 KCNJ14Q9UNX9 436 aa21.13■□□□□ 0.97
COL9A3-205ENST00000466192 YEATS4O95619 227 aa21.13■□□□□ 0.97
COL9A3-205ENST00000466192 MMP1P03956 469 aa21.13■□□□□ 0.97
COL9A3-205ENST00000466192 BAG6P46379 1132 aa21.13■□□□□ 0.97
COL9A3-205ENST00000466192 UVSSAQ2YD98 709 aa21.13■□□□□ 0.97
COL9A3-205ENST00000466192 PODNQ7Z5L7 613 aa21.13■□□□□ 0.97
COL9A3-205ENST00000466192 C7orf43Q8WVR3 580 aa21.13■□□□□ 0.97
COL9A3-205ENST00000466192 GOLPH3LQ9H4A5 285 aa21.13■□□□□ 0.97
COL9A3-205ENST00000466192 PCDHA7Q9UN72 937 aa21.13■□□□□ 0.97
COL9A3-205ENST00000466192 RASA1P20936 1047 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 GNL2Q13823 731 aaKnown RBP21.12■□□□□ 0.97
COL9A3-205ENST00000466192 STK38Q15208 465 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 ANO1Q5XXA6 986 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 TMTC3Q6ZXV5 915 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 MYH8P13535 1937 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 USP17L3A6NCW0 530 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 USP17L4A6NCW7 530 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 SCNN1DP51172 638 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 TYRO3Q06418 890 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 SF3B2Q13435 895 aaKnown RBP21.12■□□□□ 0.97
COL9A3-205ENST00000466192 PKN1Q16512 942 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 C16orf86Q6ZW13 317 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 USP17L1Q7RTZ2 530 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 DGKHQ86XP1 1220 aa21.12■□□□□ 0.97
COL9A3-205ENST00000466192 ZNF444Q8N0Y2 327 aaPredicted RBP21.12■□□□□ 0.97
COL9A3-205ENST00000466192 SNED1Q8TER0 1413 aa21.11■□□□□ 0.97
COL9A3-205ENST00000466192 PRPF3O43395 683 aaKnown RBP21.11■□□□□ 0.97
COL9A3-205ENST00000466192 TSPY3P0CV98 308 aa21.11■□□□□ 0.97
COL9A3-205ENST00000466192 TSPY8P0CW00 308 aa21.11■□□□□ 0.97
COL9A3-205ENST00000466192 CDK8P49336 464 aa21.11■□□□□ 0.97
COL9A3-205ENST00000466192 ANKS1AQ92625 1134 aa21.11■□□□□ 0.97
COL9A3-205ENST00000466192 SHISA4Q96DD7 197 aa21.11■□□□□ 0.97
COL9A3-205ENST00000466192 USP25Q9UHP3 1055 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms