RNA–Protein interactions for RNA: ENST00000464316.5

CCNL1-204, Transcript of cyclin L1, human

TSL 1 (best)

Gene CCNL1, Length 3,843 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-204	ENST00000464316	KBTBD3	Q8NAB2	608 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	C3orf20	Q8ND61	904 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	SCLT1	Q96NL6	688 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	SUGCT	Q9HAC7	445 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	MAP3K2	Q9Y2U5	619 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	MED1	Q15648	1581 aa	Predicted RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	FLT4	P35916	1363 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316		E7EWF7	191 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	CLSTN1	O94985	981 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	KIF23	Q02241	960 aa	Predicted RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	RUFY4	Q6ZNE9	571 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	ZNF589	Q86UQ0	364 aa	Predicted RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	TMEM139	Q8IV31	216 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	ANKS4B	Q8N8V4	417 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	NGDN	Q8NEJ9	315 aa	Known RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	CCHCR1	Q8TD31	782 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	PCMTD1	Q96MG8	357 aa	Predicted RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	NEUROD6	Q96NK8	337 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	NUP58	Q9BVL2	599 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	IRX2	Q9BZI1	471 aa	Predicted RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	TMX4	Q9H1E5	349 aa	Predicted RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	RMND1	Q9NWS8	449 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	CHPF2	Q9P2E5	772 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	TAOK2	Q9UL54	1235 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	ITIH6	Q6UXX5	1313 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	PRC1	O43663	620 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	PRPF6	O94906	941 aa	Known RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	SYF2	O95926	243 aa	Known RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	TCP1	P17987	556 aa	Known RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	CASP14	P31944	242 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	METAP2	P50579	478 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	SLC8A3	P57103	927 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	SKOR1	P84550	965 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	EXOSC10	Q01780	885 aa	Known RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	PAK2	Q13177	524 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	GLE1	Q53GS7	698 aa	Known RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	C1orf141	Q5JVX7	400 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	CCDC129	Q6ZRS4	1044 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	UBE3B	Q7Z3V4	1068 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	TRIM58	Q8NG06	486 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	MAGEC3	Q8TD91	643 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	JAKMIP2	Q96AA8	810 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	IQCD	Q96DY2	449 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	CDC5L	Q99459	802 aa	Known RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	PAIP2	Q9BPZ3	127 aa	Known RBP	4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	SLF1	Q9BQI6	1058 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	EPN3	Q9H201	632 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	SWAP70	Q9UH65	585 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	MAN1B1	Q9UKM7	699 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	SAMM50	Q9Y512	469 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	MAP3K19	Q56UN5	1328 aa		4.35	□□□□□ -1.71
CCNL1-204	ENST00000464316	NRAP	Q86VF7	1730 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	PSMD14	O00487	310 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	ZNF213	O14771	459 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	IDE	P14735	1019 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	SSRP1	Q08945	709 aa	Known RBP	4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	NNT	Q13423	1086 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	OTUD7B	Q6GQQ9	843 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	VPS37D	Q86XT2	251 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	PARP9	Q8IXQ6	854 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	FBXL16	Q8N461	479 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	NOA1	Q8NC60	698 aa	Known RBP	4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	SAAL1	Q96ER3	474 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	CAPZA3	Q96KX2	299 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	AGXT2	Q9BYV1	514 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	RNF14	Q9UBS8	474 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	TSKS	Q9UJT2	592 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	HPSE	Q9Y251	543 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	SYNRG	Q9UMZ2	1314 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	FAM237A	A0A1B0GTK4	181 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	BTBD11	A6QL63	1104 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	HMGB1P1	B2RPK0	211 aa	Predicted RBP	4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	POLR2D	O15514	142 aa	Known RBP	4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	EPB41	P11171	864 aa	Known RBP	4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	ZNF18	P17022	549 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	MRPL12	P52815	198 aa	Known RBP	4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	ACTN3	Q08043	901 aa	Predicted RBP	4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	IFT88	Q13099	833 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	BIRC2	Q13490	618 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	LONRF3	Q496Y0	759 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	PLEKHO1	Q53GL0	409 aa	Predicted RBP	4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	KRT40	Q6A162	431 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	NCAPH2	Q6IBW4	605 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	RCSD1	Q6JBY9	416 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	RAD9B	Q6WBX8	426 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	CACNA2D3	Q8IZS8	1091 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	CCDC155	Q8N6L0	562 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	TCP11	Q8WWU5	503 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	HOOK2	Q96ED9	719 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	FAM212A	Q96EL1	285 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	GSDMA	Q96QA5	445 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	EYA1	Q99502	592 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	HAUS7	Q99871	368 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	MAP3K15	Q6ZN16	1313 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	SH3TC1	Q8TE82	1336 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316	LAMB1	P07942	1786 aa		4.34	□□□□□ -1.71
CCNL1-204	ENST00000464316		E7EVH7	732 aa		4.34	□□□□□ -1.72
CCNL1-204	ENST00000464316	RNF113A	O15541	343 aa	Known RBP	4.34	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms