RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 PTPRAP18433 802 aa23.57■■□□□ 1.36
COL9A3-204ENST00000463487 GTF2A2P52657 109 aa23.57■■□□□ 1.36
COL9A3-204ENST00000463487 KIF23Q02241 960 aaPredicted RBP23.57■■□□□ 1.36
COL9A3-204ENST00000463487 PDE4BQ07343 736 aa23.57■■□□□ 1.36
COL9A3-204ENST00000463487 MKRN3Q13064 507 aaKnown RBP23.57■■□□□ 1.36
COL9A3-204ENST00000463487 JMYQ8N9B5 988 aa23.57■■□□□ 1.36
COL9A3-204ENST00000463487 MKNK2Q9HBH9 465 aa23.57■■□□□ 1.36
COL9A3-204ENST00000463487 CTNNA3Q9UI47 895 aa23.57■■□□□ 1.36
COL9A3-204ENST00000463487 USP17L5A8MUK1 530 aa23.56■■□□□ 1.36
COL9A3-204ENST00000463487 SHMT1P34896 483 aa23.56■■□□□ 1.36
COL9A3-204ENST00000463487 CDK8P49336 464 aa23.56■■□□□ 1.36
COL9A3-204ENST00000463487 PPARAQ07869 468 aa23.56■■□□□ 1.36
COL9A3-204ENST00000463487 SNAPC2Q13487 334 aa23.56■■□□□ 1.36
COL9A3-204ENST00000463487 ABCB5Q2M3G0 1257 aa23.56■■□□□ 1.36
COL9A3-204ENST00000463487 KIAA1211Q6ZU35 1233 aa23.56■■□□□ 1.36
COL9A3-204ENST00000463487 ZHX2Q9Y6X8 837 aa23.56■■□□□ 1.36
COL9A3-204ENST00000463487 SGSM2O43147 1006 aa23.55■■□□□ 1.36
COL9A3-204ENST00000463487 GDF11O95390 407 aa23.55■■□□□ 1.36
COL9A3-204ENST00000463487 FGAP02671 866 aa23.55■■□□□ 1.36
COL9A3-204ENST00000463487 DYNLL2Q96FJ2 89 aa23.55■■□□□ 1.36
COL9A3-204ENST00000463487 ZBTB21Q9ULJ3 1066 aa23.55■■□□□ 1.36
COL9A3-204ENST00000463487 MYH8P13535 1937 aa23.55■■□□□ 1.36
COL9A3-204ENST00000463487 ATAD5Q96QE3 1844 aa23.54■■□□□ 1.36
COL9A3-204ENST00000463487 MPHOSPH10O00566 681 aaKnown RBP23.54■■□□□ 1.36
COL9A3-204ENST00000463487 OTUD7BQ6GQQ9 843 aa23.54■■□□□ 1.36
COL9A3-204ENST00000463487 CXCL11O14625 94 aa23.53■■□□□ 1.36
COL9A3-204ENST00000463487 IRF6O14896 467 aa23.53■■□□□ 1.36
COL9A3-204ENST00000463487 FOXP2O15409 715 aa23.53■■□□□ 1.36
COL9A3-204ENST00000463487 GH2P01242 217 aa23.53■■□□□ 1.36
COL9A3-204ENST00000463487 CETPP11597 493 aa23.53■■□□□ 1.36
COL9A3-204ENST00000463487 TMEM179Q6ZVK1 233 aa23.53■■□□□ 1.36
COL9A3-204ENST00000463487 ZNF444Q8N0Y2 327 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-204ENST00000463487 SLC44A5Q8NCS7 719 aa23.53■■□□□ 1.36
COL9A3-204ENST00000463487 CNKSR2Q8WXI2 1034 aa23.53■■□□□ 1.36
COL9A3-204ENST00000463487 GJA5P36382 358 aa23.52■■□□□ 1.36
COL9A3-204ENST00000463487 RAB3GAP1Q15042 981 aa23.52■■□□□ 1.36
COL9A3-204ENST00000463487 ZNF280CQ8ND82 737 aa23.52■■□□□ 1.36
COL9A3-204ENST00000463487 ESYT1Q9BSJ8 1104 aa23.52■■□□□ 1.36
COL9A3-204ENST00000463487 ANAPC4Q9UJX5 808 aa23.52■■□□□ 1.36
COL9A3-204ENST00000463487 ZNF213O14771 459 aa23.51■■□□□ 1.35
COL9A3-204ENST00000463487 CA12O43570 354 aa23.51■■□□□ 1.35
COL9A3-204ENST00000463487 PCP11498 1178 aaKnown RBP23.51■■□□□ 1.35
COL9A3-204ENST00000463487 EVX2Q03828 476 aa23.51■■□□□ 1.35
COL9A3-204ENST00000463487 RRP1BQ14684 758 aaKnown RBP23.51■■□□□ 1.35
COL9A3-204ENST00000463487 IMMTQ16891 758 aaKnown RBP23.51■■□□□ 1.35
COL9A3-204ENST00000463487 STK11IPQ8N1F8 1099 aa23.51■■□□□ 1.35
COL9A3-204ENST00000463487 RNF41Q9H4P4 317 aaPredicted RBP23.51■■□□□ 1.35
COL9A3-204ENST00000463487 KCNH4Q9UQ05 1017 aa23.51■■□□□ 1.35
COL9A3-204ENST00000463487 AFG3L2Q9Y4W6 797 aa23.51■■□□□ 1.35
COL9A3-204ENST00000463487 ALDH1A1P00352 501 aa23.5■■□□□ 1.35
COL9A3-204ENST00000463487 TM4SF4P48230 202 aa23.5■■□□□ 1.35
COL9A3-204ENST00000463487 WDR18Q9BV38 432 aa23.5■■□□□ 1.35
COL9A3-204ENST00000463487 U3KPZ7 1027 aaPredicted RBP23.5■■□□□ 1.35
COL9A3-204ENST00000463487 CCL15-CCL14A0A0B4J2E2 113 aa23.49■■□□□ 1.35
COL9A3-204ENST00000463487 TRIM75PA6NK02 468 aa23.49■■□□□ 1.35
COL9A3-204ENST00000463487 NT5C2P49902 561 aa23.49■■□□□ 1.35
COL9A3-204ENST00000463487 CCL15Q16663 113 aa23.49■■□□□ 1.35
COL9A3-204ENST00000463487 FASTKD5Q7L8L6 764 aaKnown RBP23.49■■□□□ 1.35
COL9A3-204ENST00000463487 CEP350Q5VT06 3117 aa23.48■■□□□ 1.35
COL9A3-204ENST00000463487 TESPA1A2RU30 521 aaPredicted RBP23.48■■□□□ 1.35
COL9A3-204ENST00000463487 SPP2Q13103 211 aa23.48■■□□□ 1.35
COL9A3-204ENST00000463487 MS4A4AQ96JQ5 239 aa23.48■■□□□ 1.35
COL9A3-204ENST00000463487 ZIC5Q96T25 663 aa23.48■■□□□ 1.35
COL9A3-204ENST00000463487 FEZ1Q99689 392 aa23.48■■□□□ 1.35
COL9A3-204ENST00000463487 IL25Q9H293 177 aa23.48■■□□□ 1.35
COL9A3-204ENST00000463487 TOMM22Q9NS69 142 aa23.48■■□□□ 1.35
COL9A3-204ENST00000463487 C19orf81C9J6K1 198 aa23.47■■□□□ 1.35
COL9A3-204ENST00000463487 AKR1B1P15121 316 aa23.47■■□□□ 1.35
COL9A3-204ENST00000463487 RASA1P20936 1047 aa23.47■■□□□ 1.35
COL9A3-204ENST00000463487 CTDSPL2Q05D32 466 aa23.47■■□□□ 1.35
COL9A3-204ENST00000463487 PPP4R3BQ5MIZ7 849 aa23.47■■□□□ 1.35
COL9A3-204ENST00000463487 SH2D4AQ9H788 454 aa23.47■■□□□ 1.35
COL9A3-204ENST00000463487 ARHGEF10LQ9HCE6 1279 aa23.47■■□□□ 1.35
COL9A3-204ENST00000463487 ANO2Q9NQ90 1003 aa23.47■■□□□ 1.35
COL9A3-204ENST00000463487 WBP1LQ9NX94 342 aa23.47■■□□□ 1.35
COL9A3-204ENST00000463487 SAGE1Q9NXZ1 904 aa23.47■■□□□ 1.35
COL9A3-204ENST00000463487 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.47■■□□□ 1.35
COL9A3-204ENST00000463487 A0A0G2JLL6 359 aaPredicted RBP23.46■■□□□ 1.35
COL9A3-204ENST00000463487 USP17L10C9JJH3 530 aa23.46■■□□□ 1.35
COL9A3-204ENST00000463487 SMIM22K7EJ46 135 aa23.46■■□□□ 1.35
COL9A3-204ENST00000463487 TSPY3P0CV98 308 aa23.46■■□□□ 1.35
COL9A3-204ENST00000463487 TSPY8P0CW00 308 aa23.46■■□□□ 1.35
COL9A3-204ENST00000463487 HAND2P61296 217 aa23.46■■□□□ 1.35
COL9A3-204ENST00000463487 SEPT2Q15019 361 aa23.46■■□□□ 1.35
COL9A3-204ENST00000463487 MFSD6Q6ZSS7 791 aa23.46■■□□□ 1.35
COL9A3-204ENST00000463487 PRRT2Q7Z6L0 340 aaPredicted RBP23.46■■□□□ 1.35
COL9A3-204ENST00000463487 CCDC84Q86UT8 332 aaPredicted RBP23.46■■□□□ 1.35
COL9A3-204ENST00000463487 IFNL1Q8IU54 200 aa23.46■■□□□ 1.35
COL9A3-204ENST00000463487 KANSL2Q9H9L4 492 aa23.46■■□□□ 1.35
COL9A3-204ENST00000463487 ZCCHC17Q9NP64 241 aaKnown RBP23.46■■□□□ 1.35
COL9A3-204ENST00000463487 TMOD4Q9NZQ9 345 aa23.46■■□□□ 1.35
COL9A3-204ENST00000463487 LAMA4Q16363 1823 aa23.45■■□□□ 1.34
COL9A3-204ENST00000463487 PHIPQ8WWQ0 1821 aa23.45■■□□□ 1.34
COL9A3-204ENST00000463487 TSPY2A6NKD2 308 aa23.45■■□□□ 1.34
COL9A3-204ENST00000463487 ORC4O43929 436 aa23.45■■□□□ 1.34
COL9A3-204ENST00000463487 PRDM1O75626 825 aa23.45■■□□□ 1.34
COL9A3-204ENST00000463487 USP14P54578 494 aa23.45■■□□□ 1.34
COL9A3-204ENST00000463487 JAG1P78504 1218 aa23.45■■□□□ 1.34
COL9A3-204ENST00000463487 ICA1Q05084 483 aa23.45■■□□□ 1.34
COL9A3-204ENST00000463487 AKNAD1Q5T1N1 836 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms