RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ASNSP08243 561 aa27.29■■□□□ 1.96
CCDC28B-203ENST00000461819 SHMT1P34896 483 aa27.29■■□□□ 1.96
CCDC28B-203ENST00000461819 INHBEP58166 350 aa27.29■■□□□ 1.96
CCDC28B-203ENST00000461819 SNAPC2Q13487 334 aa27.29■■□□□ 1.96
CCDC28B-203ENST00000461819 CERKLQ49MI3 558 aaPredicted RBP27.29■■□□□ 1.96
CCDC28B-203ENST00000461819 TAOK2Q9UL54 1235 aa27.29■■□□□ 1.96
CCDC28B-203ENST00000461819 TM4SF4P48230 202 aa27.28■■□□□ 1.96
CCDC28B-203ENST00000461819 VPS53Q5VIR6 699 aa27.28■■□□□ 1.96
CCDC28B-203ENST00000461819 CCDC84Q86UT8 332 aaPredicted RBP27.28■■□□□ 1.96
CCDC28B-203ENST00000461819 SLC44A5Q8NCS7 719 aa27.28■■□□□ 1.96
CCDC28B-203ENST00000461819 ZBTB21Q9ULJ3 1066 aa27.28■■□□□ 1.96
CCDC28B-203ENST00000461819 CCL15-CCL14A0A0B4J2E2 113 aa27.27■■□□□ 1.96
CCDC28B-203ENST00000461819 SMIM22K7EJ46 135 aa27.27■■□□□ 1.96
CCDC28B-203ENST00000461819 CCL15Q16663 113 aa27.27■■□□□ 1.96
CCDC28B-203ENST00000461819 MS4A4AQ96JQ5 239 aa27.27■■□□□ 1.96
CCDC28B-203ENST00000461819 GINM1Q9NU53 330 aa27.27■■□□□ 1.96
CCDC28B-203ENST00000461819 ROBO3Q96MS0 1386 aa27.26■■□□□ 1.95
CCDC28B-203ENST00000461819 CA12O43570 354 aa27.26■■□□□ 1.95
CCDC28B-203ENST00000461819 GH2P01242 217 aa27.26■■□□□ 1.95
CCDC28B-203ENST00000461819 CETPP11597 493 aa27.26■■□□□ 1.95
CCDC28B-203ENST00000461819 ABCB5Q2M3G0 1257 aa27.26■■□□□ 1.95
CCDC28B-203ENST00000461819 SHROOM1Q2M3G4 852 aaPredicted RBP27.26■■□□□ 1.95
CCDC28B-203ENST00000461819 C16orf86Q6ZW13 317 aa27.26■■□□□ 1.95
CCDC28B-203ENST00000461819 AS3MTQ9HBK9 375 aa27.26■■□□□ 1.95
CCDC28B-203ENST00000461819 KCNH4Q9UQ05 1017 aa27.26■■□□□ 1.95
CCDC28B-203ENST00000461819 TRIM75PA6NK02 468 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 USP17L5A8MUK1 530 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 FOXP2O15409 715 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 CDK8P49336 464 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 JAG1P78504 1218 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 BMP2KLQ5H9B9 411 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 STK11IPQ8N1F8 1099 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 RUFY2Q8WXA3 655 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 TBC1D2Q9BYX2 928 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 CABP5Q9NP86 173 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 AFG3L2Q9Y4W6 797 aa27.25■■□□□ 1.95
CCDC28B-203ENST00000461819 MPHOSPH10O00566 681 aaKnown RBP27.24■■□□□ 1.95
CCDC28B-203ENST00000461819 FOXN1O15353 648 aa27.24■■□□□ 1.95
CCDC28B-203ENST00000461819 TRPA1O75762 1119 aa27.24■■□□□ 1.95
CCDC28B-203ENST00000461819 HSPD1P10809 573 aaKnown RBP27.24■■□□□ 1.95
CCDC28B-203ENST00000461819 CHMLP26374 656 aa27.24■■□□□ 1.95
CCDC28B-203ENST00000461819 OTUD7BQ6GQQ9 843 aa27.24■■□□□ 1.95
CCDC28B-203ENST00000461819 IFNL1Q8IU54 200 aa27.24■■□□□ 1.95
CCDC28B-203ENST00000461819 BRI3BPQ8WY22 251 aa27.24■■□□□ 1.95
CCDC28B-203ENST00000461819 RNF186Q9NXI6 227 aa27.24■■□□□ 1.95
CCDC28B-203ENST00000461819 LAMA4Q16363 1823 aa27.23■■□□□ 1.95
CCDC28B-203ENST00000461819 RAD50Q92878 1312 aa27.23■■□□□ 1.95
CCDC28B-203ENST00000461819 TESPA1A2RU30 521 aaPredicted RBP27.23■■□□□ 1.95
CCDC28B-203ENST00000461819 CXCL11O14625 94 aa27.23■■□□□ 1.95
CCDC28B-203ENST00000461819 SLC3A2P08195 630 aaKnown RBP27.23■■□□□ 1.95
CCDC28B-203ENST00000461819 RAB3GAP1Q15042 981 aa27.23■■□□□ 1.95
CCDC28B-203ENST00000461819 ZNF280CQ8ND82 737 aa27.23■■□□□ 1.95
CCDC28B-203ENST00000461819 SAGE1Q9NXZ1 904 aa27.23■■□□□ 1.95
CCDC28B-203ENST00000461819 IGF2BP3O00425 579 aaKnown RBP eCLIP27.22■■□□□ 1.95
CCDC28B-203ENST00000461819 PPARAQ07869 468 aa27.22■■□□□ 1.95
CCDC28B-203ENST00000461819 ALX1Q15699 326 aa27.22■■□□□ 1.95
CCDC28B-203ENST00000461819 MKNK2Q9HBH9 465 aa27.22■■□□□ 1.95
CCDC28B-203ENST00000461819 TSKSQ9UJT2 592 aa27.22■■□□□ 1.95
CCDC28B-203ENST00000461819 LOC285556D6RIA3 1793 aa27.22■■□□□ 1.95
CCDC28B-203ENST00000461819 ALDH1A1P00352 501 aa27.21■■□□□ 1.95
CCDC28B-203ENST00000461819 CTCFP49711 727 aaPredicted RBP27.21■■□□□ 1.95
CCDC28B-203ENST00000461819 SPP2Q13103 211 aa27.21■■□□□ 1.95
CCDC28B-203ENST00000461819 ZNF287Q9HBT7 754 aa27.21■■□□□ 1.95
CCDC28B-203ENST00000461819 ZMYM6O95789 1325 aa27.2■■□□□ 1.95
CCDC28B-203ENST00000461819 A0A0G2JLL6 359 aaPredicted RBP27.2■■□□□ 1.94
CCDC28B-203ENST00000461819 PRRT2Q7Z6L0 340 aaPredicted RBP27.2■■□□□ 1.94
CCDC28B-203ENST00000461819 CCDC17Q96LX7 622 aa27.2■■□□□ 1.94
CCDC28B-203ENST00000461819 PTPN18Q99952 460 aa27.2■■□□□ 1.94
CCDC28B-203ENST00000461819 FGAP02671 866 aa27.19■■□□□ 1.94
CCDC28B-203ENST00000461819 AKR1B1P15121 316 aa27.19■■□□□ 1.94
CCDC28B-203ENST00000461819 GADL1Q6ZQY3 521 aa27.19■■□□□ 1.94
CCDC28B-203ENST00000461819 TMEM179Q6ZVK1 233 aa27.19■■□□□ 1.94
CCDC28B-203ENST00000461819 WDR18Q9BV38 432 aa27.19■■□□□ 1.94
CCDC28B-203ENST00000461819 IL25Q9H293 177 aa27.19■■□□□ 1.94
CCDC28B-203ENST00000461819 PDE4BQ07343 736 aa27.18■■□□□ 1.94
CCDC28B-203ENST00000461819 SEPT2Q15019 361 aa27.18■■□□□ 1.94
CCDC28B-203ENST00000461819 FASTKD5Q7L8L6 764 aaKnown RBP27.18■■□□□ 1.94
CCDC28B-203ENST00000461819 BTBD19C9JJ37 291 aa27.17■■□□□ 1.94
CCDC28B-203ENST00000461819 HSPA8P11142 646 aaKnown RBP27.17■■□□□ 1.94
CCDC28B-203ENST00000461819 CTDSPL2Q05D32 466 aa27.17■■□□□ 1.94
CCDC28B-203ENST00000461819 MTMR2Q13614 643 aa27.17■■□□□ 1.94
CCDC28B-203ENST00000461819 FAM43AQ8N2R8 423 aa27.17■■□□□ 1.94
CCDC28B-203ENST00000461819 FEZ1Q99689 392 aa27.17■■□□□ 1.94
CCDC28B-203ENST00000461819 DSCC1Q9BVC3 393 aa27.17■■□□□ 1.94
CCDC28B-203ENST00000461819 GREB1LQ9C091 1923 aaPredicted RBP27.17■■□□□ 1.94
CCDC28B-203ENST00000461819 PRDM1O75626 825 aa27.16■■□□□ 1.94
CCDC28B-203ENST00000461819 RASA1P20936 1047 aa27.16■■□□□ 1.94
CCDC28B-203ENST00000461819 HMGCS2P54868 508 aa27.16■■□□□ 1.94
CCDC28B-203ENST00000461819 USP17L10C9JJH3 530 aa27.15■■□□□ 1.94
CCDC28B-203ENST00000461819 TBC1D8O95759 1140 aa27.15■■□□□ 1.94
CCDC28B-203ENST00000461819 GUCY1A2P33402 732 aa27.15■■□□□ 1.94
CCDC28B-203ENST00000461819 LBX1P52954 281 aa27.15■■□□□ 1.94
CCDC28B-203ENST00000461819 MOGSQ13724 837 aa27.15■■□□□ 1.94
CCDC28B-203ENST00000461819 ANKRD23Q86SG2 305 aa27.15■■□□□ 1.94
CCDC28B-203ENST00000461819 ZNF444Q8N0Y2 327 aaPredicted RBP27.15■■□□□ 1.94
CCDC28B-203ENST00000461819 ZCCHC17Q9NP64 241 aaKnown RBP27.15■■□□□ 1.94
CCDC28B-203ENST00000461819 ANAPC4Q9UJX5 808 aa27.15■■□□□ 1.94
CCDC28B-203ENST00000461819 SGSM2O43147 1006 aa27.14■■□□□ 1.94
CCDC28B-203ENST00000461819 BACE1P56817 501 aa27.14■■□□□ 1.94
CCDC28B-203ENST00000461819 HAND2P61296 217 aa27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms