RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 NEFLP07196 543 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 CENPBP07199 599 aaPredicted RBP13.74□□□□□ -0.21
COL28A1-203ENST00000435823 ASNSP08243 561 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 PLCD1P51178 756 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 COL13A1Q5TAT6 717 aaPredicted RBP13.74□□□□□ -0.21
COL28A1-203ENST00000435823 TICAM2Q86XR7 235 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 RILPL2Q969X0 211 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 DCBLD2Q96PD2 775 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 CFHR5Q9BXR6 569 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 DNAJC18Q9H819 358 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 AS3MTQ9HBK9 375 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 TAOK2Q9UL54 1235 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 USP17L5A8MUK1 530 aa13.73□□□□□ -0.21
COL28A1-203ENST00000435823 M0R2C6 588 aa13.73□□□□□ -0.21
COL28A1-203ENST00000435823 GDF11O95390 407 aa13.73□□□□□ -0.21
COL28A1-203ENST00000435823 RRP1BQ14684 758 aaKnown RBP13.73□□□□□ -0.21
COL28A1-203ENST00000435823 ZMYM1Q5SVZ6 1142 aa13.73□□□□□ -0.21
COL28A1-203ENST00000435823 PTPN18Q99952 460 aa13.73□□□□□ -0.21
COL28A1-203ENST00000435823 ZCCHC17Q9NP64 241 aaKnown RBP13.73□□□□□ -0.21
COL28A1-203ENST00000435823 ARPP21Q9UBL0 812 aaPredicted RBP13.73□□□□□ -0.21
COL28A1-203ENST00000435823 AFG3L2Q9Y4W6 797 aa13.73□□□□□ -0.21
COL28A1-203ENST00000435823 TRIM75PA6NK02 468 aa13.72□□□□□ -0.21
COL28A1-203ENST00000435823 APPP05067 770 aa13.72□□□□□ -0.21
COL28A1-203ENST00000435823 TAF1CQ15572 869 aaPredicted RBP13.72□□□□□ -0.21
COL28A1-203ENST00000435823 CERKLQ49MI3 558 aaPredicted RBP13.72□□□□□ -0.21
COL28A1-203ENST00000435823 TATDN1Q6P1N9 297 aa13.72□□□□□ -0.21
COL28A1-203ENST00000435823 GIMAP6Q6P9H5 292 aa13.72□□□□□ -0.21
COL28A1-203ENST00000435823 FASTKD5Q7L8L6 764 aaKnown RBP13.72□□□□□ -0.21
COL28A1-203ENST00000435823 ANKRD23Q86SG2 305 aa13.72□□□□□ -0.21
COL28A1-203ENST00000435823 NACAP1Q9BZK3 213 aa13.72□□□□□ -0.21
COL28A1-203ENST00000435823 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.72□□□□□ -0.21
COL28A1-203ENST00000435823 SWAP70Q9UH65 585 aa13.72□□□□□ -0.21
COL28A1-203ENST00000435823 ZBTB21Q9ULJ3 1066 aa13.72□□□□□ -0.21
COL28A1-203ENST00000435823 BAZ2AQ9UIF9 1905 aaKnown RBP13.72□□□□□ -0.21
COL28A1-203ENST00000435823 A0A0G2JLL6 359 aaPredicted RBP13.71□□□□□ -0.21
COL28A1-203ENST00000435823 PATL2C9JE40 543 aaKnown RBP13.71□□□□□ -0.21
COL28A1-203ENST00000435823 BTBD19C9JJ37 291 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 USP17L12C9JPN9 530 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 USP17L21D6R901 530 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 GPR25O00155 361 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 CYP2D6P10635 497 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 TDO2P48775 406 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 GABPAQ06546 454 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 ABCB5Q2M3G0 1257 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 NOM1Q5C9Z4 860 aaKnown RBP13.71□□□□□ -0.21
COL28A1-203ENST00000435823 PRRT2Q7Z6L0 340 aaPredicted RBP13.71□□□□□ -0.21
COL28A1-203ENST00000435823 CCDC84Q86UT8 332 aaPredicted RBP13.71□□□□□ -0.21
COL28A1-203ENST00000435823 FAM43AQ8N2R8 423 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 ZNF280CQ8ND82 737 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 SEC62Q99442 399 aaKnown RBP13.71□□□□□ -0.21
COL28A1-203ENST00000435823 ZFYVE28Q9HCC9 887 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 CABP5Q9NP86 173 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 HELLSQ9NRZ9 838 aa13.71□□□□□ -0.21
COL28A1-203ENST00000435823 PHIPQ8WWQ0 1821 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 GSG1L2A8MUP6 293 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 GH2P01242 217 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 CD44P16070 742 aaKnown RBP13.7□□□□□ -0.22
COL28A1-203ENST00000435823 PDE4AP27815 886 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 SHMT1P34896 483 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 SPP2Q13103 211 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 CRHR2Q13324 411 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 C12orf60Q5U649 245 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 CTR9Q6PD62 1173 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 GADL1Q6ZQY3 521 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 WDR18Q9BV38 432 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 CASP8AP2Q9UKL3 1982 aa13.7□□□□□ -0.22
COL28A1-203ENST00000435823 POTEMA6NI47 508 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 HIP1O00291 1037 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 PDHXO00330 501 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 MPHOSPH10O00566 681 aaKnown RBP13.69□□□□□ -0.22
COL28A1-203ENST00000435823 FKTNO75072 461 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 MCMDC2Q4G0Z9 681 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 SBK1Q52WX2 424 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 CENPQQ7L2Z9 268 aaPredicted RBP13.69□□□□□ -0.22
COL28A1-203ENST00000435823 IFNL3Q8IZI9 196 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 TNS4Q8IZW8 715 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 ZNF296Q8WUU4 475 aaPredicted RBP13.69□□□□□ -0.22
COL28A1-203ENST00000435823 DYNLL2Q96FJ2 89 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 NAPBQ9H115 298 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 R3HDMLQ9H3Y0 253 aa13.69□□□□□ -0.22
COL28A1-203ENST00000435823 MYH8P13535 1937 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 CYP2D7A0A087X1C5 515 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 MINDY4BA8MYZ0 360 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 SDSP20132 328 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 JAG1P78504 1218 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 MTMR2Q13614 643 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 MOGSQ13724 837 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 RAB3GAP1Q15042 981 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 SHROOM1Q2M3G4 852 aaPredicted RBP13.68□□□□□ -0.22
COL28A1-203ENST00000435823 TTC22Q5TAA0 569 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 C16orf86Q6ZW13 317 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 PROCA1Q8NCQ7 364 aaPredicted RBP13.68□□□□□ -0.22
COL28A1-203ENST00000435823 SLC44A5Q8NCS7 719 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 CCDC17Q96LX7 622 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 PARK7Q99497 189 aaKnown RBP13.68□□□□□ -0.22
COL28A1-203ENST00000435823 EPB41L4AQ9HCS5 686 aaPredicted RBP13.68□□□□□ -0.22
COL28A1-203ENST00000435823 DIAPH3Q9NSV4 1193 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 TMOD4Q9NZQ9 345 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 SLC45A1Q9Y2W3 748 aa13.68□□□□□ -0.22
COL28A1-203ENST00000435823 PTPRFP10586 1907 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms