RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 PCBP4P57723 403 aaKnown RBP5.7□□□□□ -1.5
HMGB3-203ENST00000430118 C19orf57Q0VDD7 668 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 TMEM201Q5SNT2 666 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 LARP1BQ659C4 914 aaKnown RBP5.7□□□□□ -1.5
HMGB3-203ENST00000430118 MAP1SQ66K74 1059 aaPredicted RBP5.7□□□□□ -1.5
HMGB3-203ENST00000430118 PSAPL1Q6NUJ1 521 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 FILIP1Q7Z7B0 1213 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 MAP4K3Q8IVH8 894 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 DCAF11Q8TEB1 546 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 CORO1BQ9BR76 489 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 LACRTQ9GZZ8 138 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 PHAXQ9H814 394 aaKnown RBP5.7□□□□□ -1.5
HMGB3-203ENST00000430118 PCDH12Q9NPG4 1184 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 MBIPQ9NS73 344 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 IFT57Q9NWB7 429 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 GDF2Q9UK05 429 aaPredicted RBP5.7□□□□□ -1.5
HMGB3-203ENST00000430118 ADAM30Q9UKF2 790 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 PLAAQ9Y263 795 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 PPME1Q9Y570 386 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 TRAPPC8Q9Y2L5 1435 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 REREQ9P2R6 1566 aa5.7□□□□□ -1.5
HMGB3-203ENST00000430118 SETD1BQ9UPS6 1966 aaKnown RBP5.69□□□□□ -1.5
HMGB3-203ENST00000430118 AGLP35573 1532 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.69□□□□□ -1.5
HMGB3-203ENST00000430118 SIGLEC1Q9BZZ2 1709 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 SAMD9Q5K651 1589 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 SCAPERQ9BY12 1400 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 CCDC163A0A0D9SF12 145 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 CDC14CA4D256 554 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 CCDC85CA6NKD9 419 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 TNFRSF10CO14798 259 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 TOM1O60784 492 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 HTR3BO95264 441 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 GJB6O95452 261 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 TCEA2Q15560 299 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 CDCP2Q5VXM1 449 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 SLCO4C1Q6ZQN7 724 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 EEPD1Q7L9B9 569 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 TTC6Q86TZ1 520 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 NPAS3Q8IXF0 933 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 FAM178BQ8IXR5 827 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 GOLGA6L1Q8N7Z2 621 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 ZSCAN1Q8NBB4 408 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 TNKS2Q9H2K2 1166 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 SH2B1Q9NRF2 756 aaPredicted RBP5.69□□□□□ -1.5
HMGB3-203ENST00000430118 KLF15Q9UIH9 416 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 CAMSAP1Q5T5Y3 1602 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 PLA2R1Q13018 1463 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 C3P01024 1663 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 CPS1P31327 1500 aa5.69□□□□□ -1.5
HMGB3-203ENST00000430118 NPATQ14207 1427 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 ESYT3A0FGR9 886 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 IQCA1LA6NCM1 817 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 GPR25O00155 361 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 DDAH1O94760 285 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 CCNFP41002 786 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 GSTM4Q03013 218 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 PTPN11Q06124 597 aaPredicted RBP5.68□□□□□ -1.5
HMGB3-203ENST00000430118 POU4F3Q15319 338 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 PPP2R5EQ16537 467 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 KIF4BQ2VIQ3 1234 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 WIPI1Q5MNZ9 446 aaPredicted RBP5.68□□□□□ -1.5
HMGB3-203ENST00000430118 FCHSD1Q86WN1 690 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 VWA5B2Q8N398 1253 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 KLHL23Q8NBE8 558 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 ZSWIM2Q8NEG5 633 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 GPBAR1Q8TDU6 330 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 IRF7Q92985 503 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 ACSBG1Q96GR2 724 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 ST7Q9NRC1 585 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 TYW1Q9NV66 732 aaKnown RBP5.68□□□□□ -1.5
HMGB3-203ENST00000430118 PCDHA4Q9UN74 947 aa5.68□□□□□ -1.5
HMGB3-203ENST00000430118 NUP153P49790 1475 aaKnown RBP5.68□□□□□ -1.5
HMGB3-203ENST00000430118 PTPRKQ15262 1439 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 GRIN3BO60391 1043 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 RAB11FIP3O75154 756 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 VIL1P09327 827 aaKnown RBP5.67□□□□□ -1.5
HMGB3-203ENST00000430118 NME1P15531 152 aaKnown RBP5.67□□□□□ -1.5
HMGB3-203ENST00000430118 SELPP16109 830 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 CEBPAP49715 358 aaPredicted RBP5.67□□□□□ -1.5
HMGB3-203ENST00000430118 ZNF143P52747 638 aaPredicted RBP5.67□□□□□ -1.5
HMGB3-203ENST00000430118 SQSTM1Q13501 440 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 GRIK5Q16478 980 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 TMEM67Q5HYA8 995 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 HGSNATQ68CP4 663 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 GDF6Q6KF10 455 aaPredicted RBP5.67□□□□□ -1.5
HMGB3-203ENST00000430118 CYFIP1Q7L576 1253 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 NLRC3Q7RTR2 1065 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 SGSM3Q96HU1 749 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 SLC26A8Q96RN1 970 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 CNNM2Q9H8M5 875 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 PRDM6Q9NQX0 595 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 ZMYM5Q9UJ78 669 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 KDM5CP41229 1560 aa5.67□□□□□ -1.5
HMGB3-203ENST00000430118 PLCH2O75038 1416 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 MROH2AA6NES4 1674 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 ZNF142P52746 1687 aaPredicted RBP5.66□□□□□ -1.5
HMGB3-203ENST00000430118 SUPT6HQ7KZ85 1726 aaKnown RBP5.66□□□□□ -1.5
HMGB3-203ENST00000430118 MYO5CQ9NQX4 1742 aa5.66□□□□□ -1.5
HMGB3-203ENST00000430118 NAT2P11245 290 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms