RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 CCSER2Q9H7U1 834 aa9.31□□□□□ -0.92
CCDC88A-206ENST00000430086 REV1Q9UBZ9 1251 aa9.31□□□□□ -0.92
CCDC88A-206ENST00000430086 PRR19A6NJB7 356 aa9.3□□□□□ -0.92
CCDC88A-206ENST00000430086 FAM170BA6NMN3 283 aa9.3□□□□□ -0.92
CCDC88A-206ENST00000430086 FAM87AP0C7U9 286 aa9.3□□□□□ -0.92
CCDC88A-206ENST00000430086 GJA8P48165 433 aa9.3□□□□□ -0.92
CCDC88A-206ENST00000430086 ZNF165P49910 485 aa9.3□□□□□ -0.92
CCDC88A-206ENST00000430086 DUSP27Q5VZP5 1158 aa9.3□□□□□ -0.92
CCDC88A-206ENST00000430086 OSBPL1AQ9BXW6 950 aa9.3□□□□□ -0.92
CCDC88A-206ENST00000430086 PRDM10Q9NQV6 1147 aa9.3□□□□□ -0.92
CCDC88A-206ENST00000430086 RNF112Q9ULX5 631 aa9.3□□□□□ -0.92
CCDC88A-206ENST00000430086 PCDHB14Q9Y5E9 798 aa9.3□□□□□ -0.92
CCDC88A-206ENST00000430086 CYP27C1Q4G0S4 372 aa9.29□□□□□ -0.92
CCDC88A-206ENST00000430086 ZNF765Q7L2R6 523 aa9.29□□□□□ -0.92
CCDC88A-206ENST00000430086 GPRASP2Q96D09 838 aa9.29□□□□□ -0.92
CCDC88A-206ENST00000430086 ACBD3Q9H3P7 528 aa9.29□□□□□ -0.92
CCDC88A-206ENST00000430086 LEFTY1O75610 366 aa9.28□□□□□ -0.92
CCDC88A-206ENST00000430086 COL9A2Q14055 689 aaPredicted RBP9.28□□□□□ -0.92
CCDC88A-206ENST00000430086 PRAMEF13Q5VWM6 474 aa9.28□□□□□ -0.92
CCDC88A-206ENST00000430086 TOP6BLQ8N6T0 577 aa9.28□□□□□ -0.92
CCDC88A-206ENST00000430086 LOC100996750A0A140TA64 210 aa9.27□□□□□ -0.93
CCDC88A-206ENST00000430086 MCM4P33991 863 aa9.27□□□□□ -0.93
CCDC88A-206ENST00000430086 YARSP54577 528 aaKnown RBP9.27□□□□□ -0.93
CCDC88A-206ENST00000430086 CLCQ05315 142 aa9.27□□□□□ -0.93
CCDC88A-206ENST00000430086 MLECQ14165 292 aa9.27□□□□□ -0.93
CCDC88A-206ENST00000430086 SLFN12Q8IYM2 578 aa9.27□□□□□ -0.93
CCDC88A-206ENST00000430086 KRTAP4-6Q9BYQ5 205 aa9.27□□□□□ -0.93
CCDC88A-206ENST00000430086 PIM2Q9P1W9 311 aa9.27□□□□□ -0.93
CCDC88A-206ENST00000430086 LEMD3Q9Y2U8 911 aa9.27□□□□□ -0.93
CCDC88A-206ENST00000430086 SLITRK5O94991 958 aa9.26□□□□□ -0.93
CCDC88A-206ENST00000430086 TGFB1P01137 390 aa9.26□□□□□ -0.93
CCDC88A-206ENST00000430086 GK5Q6ZS86 529 aa9.26□□□□□ -0.93
CCDC88A-206ENST00000430086 FAM214BQ7L5A3 538 aa9.26□□□□□ -0.93
CCDC88A-206ENST00000430086 FAM13CQ8NE31 585 aa9.26□□□□□ -0.93
CCDC88A-206ENST00000430086 INPP5FQ9Y2H2 1132 aa9.26□□□□□ -0.93
CCDC88A-206ENST00000430086 UPK3BL1B0FP48 263 aa9.25□□□□□ -0.93
CCDC88A-206ENST00000430086 UPK3BL2E5RIL1 263 aa9.25□□□□□ -0.93
CCDC88A-206ENST00000430086 EOMESO95936 686 aa9.25□□□□□ -0.93
CCDC88A-206ENST00000430086 FOSL1P15407 271 aa9.25□□□□□ -0.93
CCDC88A-206ENST00000430086 GMIPQ9P107 970 aa9.25□□□□□ -0.93
CCDC88A-206ENST00000430086 SLC22A31A6NKX4 558 aa9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 DNAJA2O60884 412 aa9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 IMPDH2P12268 514 aa9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 SOX9P48436 509 aa9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 TNNI2P48788 182 aa9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 LRRFIP1Q32MZ4 808 aaKnown RBP9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 LETMD1Q6P1Q0 360 aa9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 INTS5Q6P9B9 1019 aaKnown RBP9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 CYB5D2Q8WUJ1 264 aa9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 MIPEPQ99797 713 aa9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 DPH2Q9BQC3 489 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 GINM1Q9NU53 330 aa9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 ZNRF3Q9ULT6 936 aa9.24□□□□□ -0.93
CCDC88A-206ENST00000430086 MEIS3P2A8K0S8 358 aa9.23□□□□□ -0.93
CCDC88A-206ENST00000430086 CHURC1-FNTBB4DL54 471 aa9.23□□□□□ -0.93
CCDC88A-206ENST00000430086 IGF2BP3O00425 579 aaKnown RBP eCLIP9.23□□□□□ -0.93
CCDC88A-206ENST00000430086 GRIK1P39086 918 aa9.23□□□□□ -0.93
CCDC88A-206ENST00000430086 SEC16BQ96JE7 1060 aa9.23□□□□□ -0.93
CCDC88A-206ENST00000430086 KLHL3Q9UH77 587 aa9.23□□□□□ -0.93
CCDC88A-206ENST00000430086 GTF2IRD1Q9UHL9 959 aa9.23□□□□□ -0.93
CCDC88A-206ENST00000430086 CYP26A1O43174 497 aa9.22□□□□□ -0.93
CCDC88A-206ENST00000430086 COBLO75128 1261 aa9.22□□□□□ -0.93
CCDC88A-206ENST00000430086 ZMYM1Q5SVZ6 1142 aa9.22□□□□□ -0.93
CCDC88A-206ENST00000430086 CDCP2Q5VXM1 449 aa9.22□□□□□ -0.93
CCDC88A-206ENST00000430086 ZNF746Q6NUN9 644 aaPredicted RBP9.22□□□□□ -0.93
CCDC88A-206ENST00000430086 XAGE3Q8WTP9 111 aa9.22□□□□□ -0.93
CCDC88A-206ENST00000430086 HEXIM2Q96MH2 286 aaKnown RBP9.22□□□□□ -0.93
CCDC88A-206ENST00000430086 MKNK2Q9HBH9 465 aa9.22□□□□□ -0.93
CCDC88A-206ENST00000430086 EFR3BQ9Y2G0 817 aa9.22□□□□□ -0.93
CCDC88A-206ENST00000430086 NPM2Q86SE8 214 aaKnown RBP9.21□□□□□ -0.94
CCDC88A-206ENST00000430086 DNAJB8Q8NHS0 232 aa9.21□□□□□ -0.94
CCDC88A-206ENST00000430086 RIN3Q8TB24 985 aa9.21□□□□□ -0.94
CCDC88A-206ENST00000430086 PPP1R13LQ8WUF5 828 aa9.21□□□□□ -0.94
CCDC88A-206ENST00000430086 TMEM40Q8WWA1 233 aa9.21□□□□□ -0.94
CCDC88A-206ENST00000430086 CEP131Q9UPN4 1083 aa9.21□□□□□ -0.94
CCDC88A-206ENST00000430086 MAPK8IP1Q9UQF2 711 aa9.21□□□□□ -0.94
CCDC88A-206ENST00000430086 HOXA10P31260 410 aaPredicted RBP9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 CD97P48960 835 aa9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 GNL2Q13823 731 aaKnown RBP9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 OVOS1Q6IE37 1185 aa9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 RBBP8NLQ8NC74 664 aaPredicted RBP9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 ATG4CQ96DT6 458 aa9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 COX4I2Q96KJ9 171 aa9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 CCDC74BQ96LY2 380 aa9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 FERD3LQ96RJ6 166 aa9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 TINF2Q9BSI4 451 aa9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 CNNM2Q9H8M5 875 aa9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 CAPN10Q9HC96 672 aa9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 LRRC4CQ9HCJ2 640 aa9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 PRDM5Q9NQX1 630 aaPredicted RBP9.2□□□□□ -0.94
CCDC88A-206ENST00000430086 ATF4P18848 351 aaPredicted RBP9.19□□□□□ -0.94
CCDC88A-206ENST00000430086 MSMPQ1L6U9 139 aa9.19□□□□□ -0.94
CCDC88A-206ENST00000430086 ARSHQ5FYA8 562 aa9.19□□□□□ -0.94
CCDC88A-206ENST00000430086 C22orf34Q6ZV56 151 aa9.19□□□□□ -0.94
CCDC88A-206ENST00000430086 TPX2Q9ULW0 747 aaKnown RBP9.19□□□□□ -0.94
CCDC88A-206ENST00000430086 PPT2Q9UMR5 302 aa9.19□□□□□ -0.94
CCDC88A-206ENST00000430086 RGS13O14921 159 aa9.18□□□□□ -0.94
CCDC88A-206ENST00000430086 CYP7A1P22680 504 aa9.18□□□□□ -0.94
CCDC88A-206ENST00000430086 ETV3P41162 512 aa9.18□□□□□ -0.94
CCDC88A-206ENST00000430086 NASPP49321 788 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms