RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 GINM1Q9NU53 330 aa20.67■□□□□ 0.9
CHCHD3-202ENST00000423635 USP17L10C9JJH3 530 aa20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 CCND3P30281 292 aaPredicted RBP20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 RGS2P41220 211 aa20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 ERVK-9P63128 1117 aa20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 ERVK-24P63145 666 aa20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 JAG1P78504 1218 aa20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 MDM2Q00987 491 aaPredicted RBP20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 FOXP4Q8IVH2 680 aaPredicted RBP20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 GTF3C2Q8WUA4 911 aaPredicted RBP20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 LAMA2P24043 3122 aaKnown RBP20.66■□□□□ 0.9
CHCHD3-202ENST00000423635 ARID4AP29374 1257 aaPredicted RBP20.65■□□□□ 0.9
CHCHD3-202ENST00000423635 POTEEQ6S8J3 1075 aa20.65■□□□□ 0.9
CHCHD3-202ENST00000423635 PI16Q6UXB8 463 aa20.65■□□□□ 0.9
CHCHD3-202ENST00000423635 GPR142Q7Z601 462 aa20.65■□□□□ 0.9
CHCHD3-202ENST00000423635 NEUROD6Q96NK8 337 aa20.65■□□□□ 0.9
CHCHD3-202ENST00000423635 GUCD1Q96NT3 240 aa20.65■□□□□ 0.9
CHCHD3-202ENST00000423635 PORCNQ9H237 461 aa20.65■□□□□ 0.9
CHCHD3-202ENST00000423635 RAI14Q9P0K7 980 aa20.65■□□□□ 0.9
CHCHD3-202ENST00000423635 NOB1Q9ULX3 412 aaKnown RBP20.65■□□□□ 0.9
CHCHD3-202ENST00000423635 DNAH12Q6ZR08 3092 aa20.64■□□□□ 0.9
CHCHD3-202ENST00000423635 MTX1Q13505 466 aa20.64■□□□□ 0.89
CHCHD3-202ENST00000423635 CCL14Q16627 93 aa20.64■□□□□ 0.89
CHCHD3-202ENST00000423635 PLEKHH3Q7Z736 793 aa20.64■□□□□ 0.89
CHCHD3-202ENST00000423635 SH3RF3Q8TEJ3 882 aaPredicted RBP20.64■□□□□ 0.89
CHCHD3-202ENST00000423635 MEIS3Q99687 375 aa20.64■□□□□ 0.89
CHCHD3-202ENST00000423635 APBA2Q99767 749 aa20.63■□□□□ 0.89
CHCHD3-202ENST00000423635 API5Q9BZZ5 524 aaKnown RBP20.63■□□□□ 0.89
CHCHD3-202ENST00000423635 DNAJC18Q9H819 358 aa20.63■□□□□ 0.89
CHCHD3-202ENST00000423635 SRGAP3O43295 1099 aa20.62■□□□□ 0.89
CHCHD3-202ENST00000423635 BAG3O95817 575 aa20.62■□□□□ 0.89
CHCHD3-202ENST00000423635 PPP4CP60510 307 aa20.62■□□□□ 0.89
CHCHD3-202ENST00000423635 CCAR1Q8IX12 1150 aaKnown RBP20.62■□□□□ 0.89
CHCHD3-202ENST00000423635 EMILIN3Q9NT22 766 aa20.62■□□□□ 0.89
CHCHD3-202ENST00000423635 LRP2BPQ9P2M1 347 aa20.62■□□□□ 0.89
CHCHD3-202ENST00000423635 PLCG2P16885 1265 aa20.61■□□□□ 0.89
CHCHD3-202ENST00000423635 MCAMP43121 646 aa20.61■□□□□ 0.89
CHCHD3-202ENST00000423635 MAP2K5Q13163 448 aa20.61■□□□□ 0.89
CHCHD3-202ENST00000423635 GORABQ5T7V8 394 aa20.61■□□□□ 0.89
CHCHD3-202ENST00000423635 EDC3Q96F86 508 aaKnown RBP20.61■□□□□ 0.89
CHCHD3-202ENST00000423635 NOL10Q9BSC4 688 aaKnown RBP20.61■□□□□ 0.89
CHCHD3-202ENST00000423635 SENP6Q9GZR1 1112 aaPredicted RBP20.61■□□□□ 0.89
CHCHD3-202ENST00000423635 SIPA1L1O43166 1804 aa20.61■□□□□ 0.89
CHCHD3-202ENST00000423635 USP17L2Q6R6M4 530 aa20.6■□□□□ 0.89
CHCHD3-202ENST00000423635 TRMT2AQ8IZ69 625 aaKnown RBP20.6■□□□□ 0.89
CHCHD3-202ENST00000423635 LBHD1Q9BQE6 289 aaPredicted RBP20.6■□□□□ 0.89
CHCHD3-202ENST00000423635 AATFQ9NY61 560 aaKnown RBP eCLIP20.6■□□□□ 0.89
CHCHD3-202ENST00000423635 ZBTB21Q9ULJ3 1066 aa20.6■□□□□ 0.89
CHCHD3-202ENST00000423635 RABGAP1Q9Y3P9 1069 aa20.6■□□□□ 0.89
CHCHD3-202ENST00000423635 VCANP13611 3396 aa20.6■□□□□ 0.89
CHCHD3-202ENST00000423635 CT47B1P0C2W7 299 aaPredicted RBP20.59■□□□□ 0.89
CHCHD3-202ENST00000423635 UQCRFS1P1P0C7P4 283 aa20.59■□□□□ 0.89
CHCHD3-202ENST00000423635 SHROOM1Q2M3G4 852 aaPredicted RBP20.59■□□□□ 0.89
CHCHD3-202ENST00000423635 TGFBRAP1Q8WUH2 860 aa20.59■□□□□ 0.89
CHCHD3-202ENST00000423635 PAGR1Q9BTK6 254 aa20.59■□□□□ 0.89
CHCHD3-202ENST00000423635 FLT1P17948 1338 aa20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 MSCO60682 206 aa20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 GLRX3O76003 335 aaKnown RBP20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 GDF11O95390 407 aa20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 GNAI3P08754 354 aa20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 MFSD14CQ5VZR4 134 aa20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 NAA16Q6N069 864 aaPredicted RBP20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 MAPKAPK5Q8IW41 473 aa20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 CRACR2BQ8N4Y2 399 aaPredicted RBP20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 LPAR1Q92633 364 aa20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 C12orf42Q96LP6 360 aa20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 FLRT1Q9NZU1 646 aa20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 PALD1Q9ULE6 856 aa20.58■□□□□ 0.89
CHCHD3-202ENST00000423635 IGSF3O75054 1194 aa20.57■□□□□ 0.88
CHCHD3-202ENST00000423635 CNMDO75829 334 aa20.57■□□□□ 0.88
CHCHD3-202ENST00000423635 HOXC6P09630 235 aa20.57■□□□□ 0.88
CHCHD3-202ENST00000423635 CCNA1P78396 465 aa20.57■□□□□ 0.88
CHCHD3-202ENST00000423635 CDCA7LQ96GN5 454 aa20.57■□□□□ 0.88
CHCHD3-202ENST00000423635 DDX20Q9UHI6 824 aaKnown RBP20.57■□□□□ 0.88
CHCHD3-202ENST00000423635 SLC15A5A6NIM6 579 aa20.56■□□□□ 0.88
CHCHD3-202ENST00000423635 PTPREP23469 700 aa20.56■□□□□ 0.88
CHCHD3-202ENST00000423635 ZNF697Q5TEC3 545 aa20.56■□□□□ 0.88
CHCHD3-202ENST00000423635 FAM161BQ96MY7 647 aa20.56■□□□□ 0.88
CHCHD3-202ENST00000423635 TRIM34Q9BYJ4 488 aa20.56■□□□□ 0.88
CHCHD3-202ENST00000423635 USP17L15C9J2P7 530 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 USP17L13C9JLJ4 530 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 USP17L11C9JVI0 530 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 USP17L18D6R9N7 530 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 USP17L22D6RA61 530 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 USP17L17D6RBQ6 530 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 USP17L19D6RCP7 530 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 USP17L20D6RJB6 530 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 DNM1LO00429 736 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 IGHA2P01877 340 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 USP17L24Q0WX57 530 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 LBX2Q6XYB7 198 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 CATSPERGQ6ZRH7 1159 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 ADGRA1Q86SQ6 560 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 ARHGAP45Q92619 1136 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 CWC22Q9HCG8 908 aaKnown RBP20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 EYSQ5T1H1 3165 aa20.55■□□□□ 0.88
CHCHD3-202ENST00000423635 G3BP1Q13283 466 aaKnown RBP eCLIP20.54■□□□□ 0.881e-7■■■□□ 15.2
CHCHD3-202ENST00000423635 TATDN1Q6P1N9 297 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms