RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 CEP70Q8NHQ1 597 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 ARHGEF11O15085 1522 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 KDM5DQ9BY66 1539 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 DAAM2Q86T65 1068 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 CDC23Q9UJX2 597 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 FAF1Q9UNN5 650 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 PIK3C2GO75747 1445 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TFRCP02786 760 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 GFM2Q969S9 779 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SPATA7Q9P0W8 599 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TTC41PQ6P2S7 1318 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 ABCC2Q92887 1545 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SPECC1LQ69YQ0 1117 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 GSDMBQ8TAX9 411 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 KLHDC4Q8TBB5 520 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 LEO1Q8WVC0 666 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TATDN2Q93075 761 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 INSRP06213 1382 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 IBTKQ9P2D0 1353 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TLDC2A0PJX2 215 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 JADE2Q9NQC1 790 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 ZBTB40Q9NUA8 1239 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 CCSAPQ6IQ19 270 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 RUFY3Q7L099 469 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SCOCQ9UIL1 159 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 KIAA0556O60303 1618 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 BEND6Q5SZJ8 279 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 RBM12BQ8IXT5 1001 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 AIDAQ96BJ3 306 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 IRX2Q9BZI1 471 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 ZRANB2O95218 330 aaKnown RBP eCLIP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 CAPN12Q6ZSI9 719 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SPATA24Q86W54 205 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 GBP7Q8N8V2 638 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 CLMNQ96JQ2 1002 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 COQ7Q99807 217 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TRIM7Q9C029 511 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 MAGEC2Q9UBF1 373 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 N4BP3O15049 544 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 GCLCP48506 637 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 INHBEP58166 350 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 AMOTL1Q8IY63 956 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC197Q8NCU1 140 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 LUC7L2Q9Y383 392 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 PCP4L1A6NKN8 68 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TUBBP07437 444 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 FAM163BP0C2L3 166 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 FERP16591 822 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 C1orf228Q6PIY5 440 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 LCA5Q86VQ0 697 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 IFT74Q96LB3 600 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 PLEKHG4BQ96PX9 1271 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 THUMPD2Q9BTF0 503 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 VIRMAQ69YN4 1812 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SRGAP2O75044 1071 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 L2HGDHQ9H9P8 463 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 VIL1P09327 827 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 PSMD7P51665 324 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 NLRP14Q86W24 1093 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TBC1D5Q92609 795 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 DDX23Q9BUQ8 820 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 RTEL1Q9NZ71 1219 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 ZNF330Q9Y3S2 320 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 IVNS1ABPQ9Y6Y0 642 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 GCOM1H8Y6P7 765 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 MYZAPP0CAP1 466 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 CCNFP41002 786 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ADCY1Q08828 1119 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 UIMC1Q96RL1 719 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 NDEL1Q9GZM8 345 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 USO1O60763 962 aaKnown RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 TUBB2AQ13885 445 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 LZTS2Q9BRK4 669 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 TUBB2BQ9BVA1 445 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 EIF3HO15372 352 aaKnown RBP eCLIP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ARHGAP27Q6ZUM4 889 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 GALNT8Q9NY28 637 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 HOXD11P31277 338 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 HNRNPMP52272 730 aaKnown RBP eCLIP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC93Q567U6 631 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 PANK4Q9NVE7 773 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 HDAC6Q9UBN7 1215 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 DACH1Q9UI36 760 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 INTUQ9ULD6 942 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 CYB5D1Q6P9G0 228 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 MPHOSPH6Q99547 160 aaKnown RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 DAAM1Q9Y4D1 1078 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 RAB3IL1Q8TBN0 382 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 SH2B1Q9NRF2 756 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 BAG2O95816 211 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 SFSWAPQ12872 951 aaKnown RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 EPAS1Q99814 870 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 SYCP2Q9BX26 1530 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 ARHGEF1Q92888 912 aaKnown RBP3.79□□□□□ -1.8
SYNE1-212ENST00000423061 MLH1P40692 756 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 BICDL1Q6ZP65 573 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 PIDD1Q9HB75 910 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 GGT7Q9UJ14 662 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 DISP3Q9P2K9 1392 aa3.79□□□□□ -1.8
SYNE1-212ENST00000423061 DPPA5A6NC42 116 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms