RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PORCNQ9H237 461 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 AS3MTQ9HBK9 375 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 HMX1Q9NP08 348 aaPredicted RBP9.95□□□□□ -0.82
VIM-202ENST00000421459 EMILIN3Q9NT22 766 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 MORF4L1Q9UBU8 362 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 HERC5Q9UII4 1024 aaKnown RBP9.95□□□□□ -0.82
VIM-202ENST00000421459 RPTORQ8N122 1335 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 MGAMO43451 1857 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 COL2A1P02458 1487 aaPredicted RBP9.94□□□□□ -0.82
VIM-202ENST00000421459 IPO8O15397 1037 aaKnown RBP9.94□□□□□ -0.82
VIM-202ENST00000421459 BAG3O95817 575 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 MAP4K4O95819 1239 aaPredicted RBP9.94□□□□□ -0.82
VIM-202ENST00000421459 PRKAR2AP13861 404 aaKnown RBP9.94□□□□□ -0.82
VIM-202ENST00000421459 CYP7A1P22680 504 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 ATP8B2P98198 1209 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 EVX2Q03828 476 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 PABPC4Q13310 644 aaKnown RBP eCLIP9.94□□□□□ -0.821e-6■□□□□ 11
VIM-202ENST00000421459 OS9Q13438 667 aaPredicted RBP9.94□□□□□ -0.82
VIM-202ENST00000421459 CCDC158Q5M9N0 1113 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 METTL16Q86W50 562 aaKnown RBP9.94□□□□□ -0.82
VIM-202ENST00000421459 CRACR2BQ8N4Y2 399 aaPredicted RBP9.94□□□□□ -0.82
VIM-202ENST00000421459 GPRC5AQ8NFJ5 357 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 SSH3Q8TE77 659 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 ANTXR1Q9H6X2 564 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 TMOD4Q9NZQ9 345 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 DBNLQ9UJU6 430 aaKnown RBP9.94□□□□□ -0.82
VIM-202ENST00000421459 ZBTB21Q9ULJ3 1066 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 TRIOBPQ9H2D6 2365 aa9.94□□□□□ -0.82
VIM-202ENST00000421459 A0A0C4DFX4 3053 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 PFASO15067 1338 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 DNAH12Q6ZR08 3092 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 USP17L10C9JJH3 530 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 CNMDO75829 334 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 GH2P01242 217 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 ASNSP08243 561 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 RLBP1P12271 317 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 CCND3P30281 292 aaPredicted RBP9.93□□□□□ -0.82
VIM-202ENST00000421459 HOXA7P31268 230 aaPredicted RBP9.93□□□□□ -0.82
VIM-202ENST00000421459 CACNB2Q08289 660 aaPredicted RBP9.93□□□□□ -0.82
VIM-202ENST00000421459 Q7L0L9 218 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 FOXP4Q8IVH2 680 aaPredicted RBP9.93□□□□□ -0.82
VIM-202ENST00000421459 USP6NLQ92738 828 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 EAF2Q96CJ1 260 aaPredicted RBP9.93□□□□□ -0.82
VIM-202ENST00000421459 GDF15Q99988 308 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 TRIM34Q9BYJ4 488 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 TBC1D2Q9BYX2 928 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 NBPF3Q9H094 633 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 DHX36Q9H2U1 1008 aaKnown RBP9.93□□□□□ -0.82
VIM-202ENST00000421459 C11orf49Q9H6J7 331 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 GPR108Q9NPR9 543 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 OGDHLQ9ULD0 1010 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 PTPRFP10586 1907 aa9.93□□□□□ -0.82
VIM-202ENST00000421459 CEP290O15078 2479 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 SIPA1L1O43166 1804 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 IDH1O75874 414 aaKnown RBP9.92□□□□□ -0.82
VIM-202ENST00000421459 MAGEA10P43363 369 aaPredicted RBP9.92□□□□□ -0.82
VIM-202ENST00000421459 ERVK-9P63128 1117 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 ERVK-24P63145 666 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 MORN1Q5T089 497 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 MAP3K21Q5TCX8 1036 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 LHX8Q68G74 356 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 GPR142Q7Z601 462 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 MAGEB6Q8N7X4 407 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 SLC17A8Q8NDX2 589 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 ACER1Q8TDN7 264 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 NUDT12Q9BQG2 462 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 FLRT1Q9NZU1 646 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 LOC285556D6RIA3 1793 aa9.92□□□□□ -0.82
VIM-202ENST00000421459 LAMA2P24043 3122 aaKnown RBP9.92□□□□□ -0.82
VIM-202ENST00000421459 C19orf81C9J6K1 198 aa9.91□□□□□ -0.82
VIM-202ENST00000421459 PLCG2P16885 1265 aa9.91□□□□□ -0.82
VIM-202ENST00000421459 ZKSCAN1P17029 563 aaPredicted RBP9.91□□□□□ -0.82
VIM-202ENST00000421459 RAB3GAP1Q15042 981 aa9.91□□□□□ -0.82
VIM-202ENST00000421459 LRRC26Q2I0M4 334 aa9.91□□□□□ -0.82
VIM-202ENST00000421459 ZKSCAN2Q63HK3 967 aa9.91□□□□□ -0.82
VIM-202ENST00000421459 PLEKHH3Q7Z736 793 aa9.91□□□□□ -0.82
VIM-202ENST00000421459 ANKLE1Q8NAG6 615 aa9.91□□□□□ -0.82
VIM-202ENST00000421459 BCL11AQ9H165 835 aa9.91□□□□□ -0.82
VIM-202ENST00000421459 PLXNB2O15031 1838 aa9.91□□□□□ -0.82
VIM-202ENST00000421459 CCER2I3L3R5 266 aa9.9□□□□□ -0.82
VIM-202ENST00000421459 HLA-DOAP06340 250 aa9.9□□□□□ -0.82
VIM-202ENST00000421459 USP5P45974 858 aa9.9□□□□□ -0.82
VIM-202ENST00000421459 PLCD1P51178 756 aa9.9□□□□□ -0.82
VIM-202ENST00000421459 PDE3AQ14432 1141 aa9.9□□□□□ -0.82
VIM-202ENST00000421459 WDR78Q5VTH9 848 aa9.9□□□□□ -0.82
VIM-202ENST00000421459 USP17L2Q6R6M4 530 aa9.9□□□□□ -0.82
VIM-202ENST00000421459 ITPRIPQ8IWB1 547 aa9.9□□□□□ -0.82
VIM-202ENST00000421459 CCAR1Q8IX12 1150 aaKnown RBP9.9□□□□□ -0.82
VIM-202ENST00000421459 ZNF512BQ96KM6 892 aaPredicted RBP9.9□□□□□ -0.82
VIM-202ENST00000421459 BTBD7Q9P203 1132 aa9.9□□□□□ -0.82
VIM-202ENST00000421459 EXOC6BQ9Y2D4 811 aa9.9□□□□□ -0.82
VIM-202ENST00000421459 NOP58Q9Y2X3 529 aaKnown RBP9.9□□□□□ -0.82
VIM-202ENST00000421459 ATAD5Q96QE3 1844 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 DOCK3Q8IZD9 2030 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 A0A1W2PPC1 479 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 DLL1O00548 723 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 COL6A1P12109 1028 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 XRCC5P13010 732 aaKnown RBP9.89□□□□□ -0.83
VIM-202ENST00000421459 MAPK4P31152 587 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 GUCY1A2P33402 732 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms