RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ANTXR2P58335 489 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 PICALMQ13492 652 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 KRT40Q6A162 431 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 SH3RF3Q8TEJ3 882 aaPredicted RBP9.67□□□□□ -0.86
USP54-203ENST00000418501 MTFR1LQ9H019 292 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 FOXP1Q9H334 677 aaPredicted RBP9.67□□□□□ -0.86
USP54-203ENST00000418501 GAKO14976 1311 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 KIAA2012Q0VF49 1180 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 ZSCAN23Q3MJ62 389 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 PSMD1Q99460 953 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 SH3GLB2Q9NR46 395 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 MPHOSPH10O00566 681 aaKnown RBP9.66□□□□□ -0.86
USP54-203ENST00000418501 KLRK1P26718 216 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 EIF6P56537 245 aaKnown RBP9.66□□□□□ -0.86
USP54-203ENST00000418501 CCDC173Q0VFZ6 552 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 TNFAIP1Q13829 316 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 DLGAP5Q15398 846 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 LEO1Q8WVC0 666 aaPredicted RBP9.66□□□□□ -0.86
USP54-203ENST00000418501 RTFDC1Q9BY42 306 aaPredicted RBP9.66□□□□□ -0.86
USP54-203ENST00000418501 BRPF3Q9ULD4 1205 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 ZDHHC9Q9Y397 364 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 GOLGA6L19H0YKK7 550 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 SPTLC2O15270 562 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 NPM3O75607 178 aaKnown RBP9.66□□□□□ -0.86
USP54-203ENST00000418501 TPM3P06753 285 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 SMARCA1P28370 1054 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 CRKP46108 304 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 RESTQ13127 1097 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 MRPS27Q92552 414 aaKnown RBP9.66□□□□□ -0.86
USP54-203ENST00000418501 RTEL1Q9NZ71 1219 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 DACH1Q9UI36 760 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 SERPINB13Q9UIV8 391 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 DIXDC1Q155Q3 683 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 CCDC144CPQ8IYA2 1237 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 ZKSCAN3Q9BRR0 538 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 C6orf50Q9HD87 102 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 POLR3EQ9NVU0 708 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 SAP30BPQ9UHR5 308 aaKnown RBP9.66□□□□□ -0.86
USP54-203ENST00000418501 CCDC194A0A1B0GVG4 234 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 CHGBP05060 677 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 PKP1Q13835 747 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 TPRNQ4KMQ1 711 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 ASPRV1Q53RT3 343 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 PNMA1Q8ND90 353 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 NEDD1Q8NHV4 660 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 PI4KBQ9UBF8 816 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 PPP1R1BQ9UD71 204 aaPredicted RBP9.66□□□□□ -0.86
USP54-203ENST00000418501 DAGLAQ9Y4D2 1042 aa9.66□□□□□ -0.86
USP54-203ENST00000418501 RGPD3A6NKT7 1758 aaPredicted RBP9.65□□□□□ -0.86
USP54-203ENST00000418501 RGPD4Q7Z3J3 1758 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 A0A1W2PQ27 194 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 A0A1W2PQ64 194 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 A0A1W2PQD8 194 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 ENTPD3O75355 529 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 TRAPPC10P48553 1259 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 C16orf86Q6ZW13 317 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 ANKS1AQ92625 1134 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.65□□□□□ -0.86
USP54-203ENST00000418501 NID2Q14112 1375 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 CDK8P49336 464 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 GUCY1B3Q02153 619 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 MYSM1Q5VVJ2 828 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 ANO1Q5XXA6 986 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 TXNRD3Q86VQ6 643 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 RCOR1Q9UKL0 485 aa9.65□□□□□ -0.86
USP54-203ENST00000418501 TRIM75PA6NK02 468 aa9.65□□□□□ -0.87
USP54-203ENST00000418501 PRDM1O75626 825 aa9.65□□□□□ -0.87
USP54-203ENST00000418501 ADD1P35611 737 aaKnown RBP9.65□□□□□ -0.87
USP54-203ENST00000418501 GPATCH4Q5T3I0 446 aaKnown RBP9.65□□□□□ -0.87
USP54-203ENST00000418501 CCAR1Q8IX12 1150 aaKnown RBP9.65□□□□□ -0.87
USP54-203ENST00000418501 ZDHHC15Q96MV8 337 aa9.65□□□□□ -0.87
USP54-203ENST00000418501 GTPBP4Q9BZE4 634 aaKnown RBP9.65□□□□□ -0.87
USP54-203ENST00000418501 TFIP11Q9UBB9 837 aaKnown RBP9.65□□□□□ -0.87
USP54-203ENST00000418501 PNMA2Q9UL42 364 aa9.65□□□□□ -0.87
USP54-203ENST00000418501 UBR3Q6ZT12 1888 aa9.65□□□□□ -0.87
USP54-203ENST00000418501 BECN2A8MW95 431 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 USP17L8P0C7I0 530 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 AMIGO3Q86WK7 504 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 EHD4Q9H223 541 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 DBNDD1Q9H9R9 158 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 CTDP1Q9Y5B0 961 aaPredicted RBP9.64□□□□□ -0.87
USP54-203ENST00000418501 ROBO3Q96MS0 1386 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 CUTAO60888 179 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 ENAHQ8N8S7 591 aaPredicted RBP9.64□□□□□ -0.87
USP54-203ENST00000418501 TAOK3Q9H2K8 898 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 TAF6LQ9Y6J9 622 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 FLT1P17948 1338 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 MARCH6O60337 910 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 RPS12P25398 132 aaKnown RBP9.64□□□□□ -0.87
USP54-203ENST00000418501 CEBPZQ03701 1054 aaKnown RBP9.64□□□□□ -0.87
USP54-203ENST00000418501 RBM26Q5T8P6 1007 aaKnown RBP9.64□□□□□ -0.87
USP54-203ENST00000418501 RCSD1Q6JBY9 416 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 TMTC3Q6ZXV5 915 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 NOSTRINQ8IVI9 506 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 FSIP1Q8NA03 581 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 AGBL3Q8NEM8 1001 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 RASSF8Q8NHQ8 419 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 EHMT1Q9H9B1 1298 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 ARHGEF10LQ9HCE6 1279 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 ANO10Q9NW15 660 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms