RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 MCATQ8IVS2 390 aaKnown RBP4.2□□□□□ -1.74
VPS41-206ENST00000418457 MRPL41Q8IXM3 137 aaKnown RBP4.2□□□□□ -1.74
VPS41-206ENST00000418457 SLC43A3Q8NBI5 491 aa4.2□□□□□ -1.74
VPS41-206ENST00000418457 FAM13CQ8NE31 585 aa4.2□□□□□ -1.74
VPS41-206ENST00000418457 MFSD14AQ96MC6 490 aa4.2□□□□□ -1.74
VPS41-206ENST00000418457 DBNDD2Q9BQY9 259 aa4.2□□□□□ -1.74
VPS41-206ENST00000418457 FOXQ1Q9C009 403 aa4.2□□□□□ -1.74
VPS41-206ENST00000418457 EHMT1Q9H9B1 1298 aa4.2□□□□□ -1.74
VPS41-206ENST00000418457 C1GALT1Q9NS00 363 aa4.2□□□□□ -1.74
VPS41-206ENST00000418457 KLHL3Q9UH77 587 aa4.2□□□□□ -1.74
VPS41-206ENST00000418457 CST3P01034 146 aaPredicted RBP4.19□□□□□ -1.74
VPS41-206ENST00000418457 IGLV1-40P01703 118 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 DNAJA1P31689 397 aaKnown RBP4.19□□□□□ -1.74
VPS41-206ENST00000418457 YARSP54577 528 aaKnown RBP4.19□□□□□ -1.74
VPS41-206ENST00000418457 CDK5R2Q13319 367 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 LRRFIP1Q32MZ4 808 aaKnown RBP4.19□□□□□ -1.74
VPS41-206ENST00000418457 PRAMEF13Q5VWM6 474 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 FBXW10Q5XX13 1052 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 ZAR1Q86SH2 424 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 FBXL6Q8N531 539 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 MFSD2AQ8NA29 543 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 CPLX3Q8WVH0 158 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 PSMG3-AS1Q96PY0 264 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 DPH2Q9BQC3 489 aaPredicted RBP4.19□□□□□ -1.74
VPS41-206ENST00000418457 SRRTQ9BXP5 876 aaKnown RBP4.19□□□□□ -1.74
VPS41-206ENST00000418457 SEMA6BQ9H3T3 888 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 STRIP2Q9ULQ0 834 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 ZNRF3Q9ULT6 936 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 PPT2Q9UMR5 302 aa4.19□□□□□ -1.74
VPS41-206ENST00000418457 SLC22A31A6NKX4 558 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 UPK3BL1B0FP48 263 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 CHURC1-FNTBB4DL54 471 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 UPK3BL2E5RIL1 263 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 DNAJA2O60884 412 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 SSBP05455 408 aaKnown RBP eCLIP4.18□□□□□ -1.74
VPS41-206ENST00000418457 FAM87AP0C7U9 286 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 ADMP35318 185 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 CYP27A1Q02318 531 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 OVOS1Q6IE37 1185 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 CCDC81Q6ZN84 652 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 SLC51AQ86UW1 340 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 SLFN12Q8IYM2 578 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 TOP6BLQ8N6T0 577 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 XAGE3Q8WTP9 111 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 CRBNQ96SW2 442 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 GMLQ99445 158 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 MIPEPQ99797 713 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.18□□□□□ -1.742e-7■■■□□ 17.8
VPS41-206ENST00000418457 PRDM10Q9NQV6 1147 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 ATG3Q9NT62 314 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 GMIPQ9P107 970 aa4.18□□□□□ -1.74
VPS41-206ENST00000418457 MEIS3P2A8K0S8 358 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 WDR64B1ANS9 1081 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 F13BP05160 661 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 RAG1P15918 1043 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 EIF6P56537 245 aaKnown RBP4.17□□□□□ -1.74
VPS41-206ENST00000418457 CYP27C1Q4G0S4 372 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 ARSHQ5FYA8 562 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 DUSP27Q5VZP5 1158 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 LETMD1Q6P1Q0 360 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 OGFOD3Q6PK18 319 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 PHACTR4Q8IZ21 702 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 SHKBP1Q8TBC3 707 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 CYB5D2Q8WUJ1 264 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 TMEM40Q8WWA1 233 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 GATA6Q92908 595 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 CCDC74BQ96LY2 380 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 METTL22Q9BUU2 404 aaPredicted RBP4.17□□□□□ -1.74
VPS41-206ENST00000418457 DUSP23Q9BVJ7 150 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 OSBPL1AQ9BXW6 950 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 ANTXR1Q9H6X2 564 aa4.17□□□□□ -1.74
VPS41-206ENST00000418457 FAM170BA6NMN3 283 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 K7ELQ4 463 aaPredicted RBP4.16□□□□□ -1.74
VPS41-206ENST00000418457 LEFTY1O75610 366 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 SLITRK5O94991 958 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 FGRP09769 529 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 NME1P15531 152 aaKnown RBP4.16□□□□□ -1.74
VPS41-206ENST00000418457 GIPRP48546 466 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 CPSF6Q16630 551 aaKnown RBP eCLIP4.16□□□□□ -1.74
VPS41-206ENST00000418457 PRSS36Q5K4E3 855 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 CDCP2Q5VXM1 449 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 ZNF746Q6NUN9 644 aaPredicted RBP4.16□□□□□ -1.74
VPS41-206ENST00000418457 ZNF765Q7L2R6 523 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 NLRC3Q7RTR2 1065 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 LSRQ86X29 649 aaPredicted RBP4.16□□□□□ -1.74
VPS41-206ENST00000418457 SHISA5Q8N114 240 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 RBBP8NLQ8NC74 664 aaPredicted RBP4.16□□□□□ -1.74
VPS41-206ENST00000418457 OR6P1Q8NGX9 317 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 ATG4CQ96DT6 458 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 SHDQ96IW2 340 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 KIF2CQ99661 725 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 TANGO6Q9C0B7 1094 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 CNNM2Q9H8M5 875 aa4.16□□□□□ -1.74
VPS41-206ENST00000418457 TPX2Q9ULW0 747 aaKnown RBP4.16□□□□□ -1.74
VPS41-206ENST00000418457 TNFRSF10CO14798 259 aa4.15□□□□□ -1.75
VPS41-206ENST00000418457 RGS13O14921 159 aa4.15□□□□□ -1.75
VPS41-206ENST00000418457 ATP2B1P20020 1258 aa4.15□□□□□ -1.75
VPS41-206ENST00000418457 GBP1P32455 592 aa4.15□□□□□ -1.75
VPS41-206ENST00000418457 ETV3P41162 512 aa4.15□□□□□ -1.75
VPS41-206ENST00000418457 CHMP4BP1P59074 171 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms