RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 GNAI2P04899 355 aa15.85■□□□□ 0.13
LINC00339-202ENST00000416769 CYP2E1P05181 493 aaPredicted RBP15.85■□□□□ 0.13
LINC00339-202ENST00000416769 PRKAR2AP13861 404 aaKnown RBP15.85■□□□□ 0.13
LINC00339-202ENST00000416769 Q7L0L9 218 aa15.85■□□□□ 0.13
LINC00339-202ENST00000416769 TMEM57Q8N5G2 664 aa15.85■□□□□ 0.13
LINC00339-202ENST00000416769 GDF15Q99988 308 aa15.85■□□□□ 0.13
LINC00339-202ENST00000416769 RBPJLQ9UBG7 517 aa15.85■□□□□ 0.13
LINC00339-202ENST00000416769 MORF4L1Q9UBU8 362 aa15.85■□□□□ 0.13
LINC00339-202ENST00000416769 ZAP70P43403 619 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 BACE1P56817 501 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 HERVK_113P62684 666 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 IRX3P78415 501 aaPredicted RBP15.84■□□□□ 0.13
LINC00339-202ENST00000416769 G3BP1Q13283 466 aaKnown RBP eCLIP15.84■□□□□ 0.13
LINC00339-202ENST00000416769 TNNI3KQ59H18 835 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 MAP3K21Q5TCX8 1036 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 NAA16Q6N069 864 aaPredicted RBP15.84■□□□□ 0.13
LINC00339-202ENST00000416769 ARHGAP45Q92619 1136 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 WDR18Q9BV38 432 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 HMX1Q9NP08 348 aaPredicted RBP15.84■□□□□ 0.13
LINC00339-202ENST00000416769 EMILIN3Q9NT22 766 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 PI4KBQ9UBF8 816 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 HERC5Q9UII4 1024 aaKnown RBP15.84■□□□□ 0.13
LINC00339-202ENST00000416769 ZBTB21Q9ULJ3 1066 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 HDAC5Q9UQL6 1122 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 FPGT-TNNI3KV9GXZ4 949 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 RPTORQ8N122 1335 aa15.84■□□□□ 0.13
LINC00339-202ENST00000416769 CCND3P30281 292 aaPredicted RBP15.83■□□□□ 0.12
LINC00339-202ENST00000416769 MAGEA10P43363 369 aaPredicted RBP15.83■□□□□ 0.12
LINC00339-202ENST00000416769 EVX2Q03828 476 aa15.83■□□□□ 0.12
LINC00339-202ENST00000416769 ZYXQ15942 572 aaKnown RBP15.83■□□□□ 0.12
LINC00339-202ENST00000416769 TTC39AQ5SRH9 613 aa15.83■□□□□ 0.12
LINC00339-202ENST00000416769 ATF7IPQ6VMQ6 1270 aa15.83■□□□□ 0.12
LINC00339-202ENST00000416769 PAGR1Q9BTK6 254 aa15.83■□□□□ 0.12
LINC00339-202ENST00000416769 C11orf49Q9H6J7 331 aa15.83■□□□□ 0.12
LINC00339-202ENST00000416769 CUL9Q8IWT3 2517 aa15.83■□□□□ 0.12
LINC00339-202ENST00000416769 MYH1P12882 1939 aa15.82■□□□□ 0.12
LINC00339-202ENST00000416769 CENPBP07199 599 aaPredicted RBP15.82■□□□□ 0.12
LINC00339-202ENST00000416769 UQCRFS1P1P0C7P4 283 aa15.82■□□□□ 0.12
LINC00339-202ENST00000416769 POLA2Q14181 598 aa15.82■□□□□ 0.12
LINC00339-202ENST00000416769 MIGA1Q8NAN2 632 aa15.82■□□□□ 0.12
LINC00339-202ENST00000416769 NBPF3Q9H094 633 aa15.82■□□□□ 0.12
LINC00339-202ENST00000416769 AS3MTQ9HBK9 375 aa15.82■□□□□ 0.12
LINC00339-202ENST00000416769 DBNLQ9UJU6 430 aaKnown RBP15.82■□□□□ 0.12
LINC00339-202ENST00000416769 OGDHLQ9ULD0 1010 aa15.82■□□□□ 0.12
LINC00339-202ENST00000416769 FRMPD3Q5JV73 1810 aa15.82■□□□□ 0.12
LINC00339-202ENST00000416769 A0A0C4DFX4 3053 aa15.81■□□□□ 0.12
LINC00339-202ENST00000416769 CNMDO75829 334 aa15.81■□□□□ 0.12
LINC00339-202ENST00000416769 ASNSP08243 561 aa15.81■□□□□ 0.12
LINC00339-202ENST00000416769 HOXA7P31268 230 aaPredicted RBP15.81■□□□□ 0.12
LINC00339-202ENST00000416769 PPP4CP60510 307 aa15.81■□□□□ 0.12
LINC00339-202ENST00000416769 CACNB2Q08289 660 aaPredicted RBP15.81■□□□□ 0.12
LINC00339-202ENST00000416769 PABPC4Q13310 644 aaKnown RBP eCLIP15.81■□□□□ 0.123e-16■■■■■ 34.8
LINC00339-202ENST00000416769 METTL16Q86W50 562 aaKnown RBP15.81■□□□□ 0.12
LINC00339-202ENST00000416769 SLC17A8Q8NDX2 589 aa15.81■□□□□ 0.12
LINC00339-202ENST00000416769 GPRC5AQ8NFJ5 357 aa15.81■□□□□ 0.12
LINC00339-202ENST00000416769 USP6NLQ92738 828 aa15.81■□□□□ 0.12
LINC00339-202ENST00000416769 TMOD4Q9NZQ9 345 aa15.81■□□□□ 0.12
LINC00339-202ENST00000416769 FLRT1Q9NZU1 646 aa15.81■□□□□ 0.12
LINC00339-202ENST00000416769 RCAN3Q9UKA8 241 aa15.81■□□□□ 0.12
LINC00339-202ENST00000416769 A0A1W2PPC1 479 aa15.8■□□□□ 0.12
LINC00339-202ENST00000416769 DLL1O00548 723 aa15.8■□□□□ 0.12
LINC00339-202ENST00000416769 MAP4K4O95819 1239 aaPredicted RBP15.8■□□□□ 0.12
LINC00339-202ENST00000416769 GH2P01242 217 aa15.8■□□□□ 0.12
LINC00339-202ENST00000416769 ERVK-9P63128 1117 aa15.8■□□□□ 0.12
LINC00339-202ENST00000416769 ERVK-24P63145 666 aa15.8■□□□□ 0.12
LINC00339-202ENST00000416769 GPR142Q7Z601 462 aa15.8■□□□□ 0.12
LINC00339-202ENST00000416769 CRACR2BQ8N4Y2 399 aaPredicted RBP15.8■□□□□ 0.12
LINC00339-202ENST00000416769 ANKLE1Q8NAG6 615 aa15.8■□□□□ 0.12
LINC00339-202ENST00000416769 NOL10Q9BSC4 688 aaKnown RBP15.8■□□□□ 0.12
LINC00339-202ENST00000416769 CCDC8Q9H0W5 538 aaPredicted RBP15.8■□□□□ 0.12
LINC00339-202ENST00000416769 DHX36Q9H2U1 1008 aaKnown RBP15.8■□□□□ 0.12
LINC00339-202ENST00000416769 ANTXR1Q9H6X2 564 aa15.8■□□□□ 0.12
LINC00339-202ENST00000416769 USP17L10C9JJH3 530 aa15.79■□□□□ 0.12
LINC00339-202ENST00000416769 RLBP1P12271 317 aa15.79■□□□□ 0.12
LINC00339-202ENST00000416769 ZKSCAN1P17029 563 aaPredicted RBP15.79■□□□□ 0.12
LINC00339-202ENST00000416769 CYP7A1P22680 504 aa15.79■□□□□ 0.12
LINC00339-202ENST00000416769 OS9Q13438 667 aaPredicted RBP15.79■□□□□ 0.12
LINC00339-202ENST00000416769 LRRC26Q2I0M4 334 aa15.79■□□□□ 0.12
LINC00339-202ENST00000416769 MORN1Q5T089 497 aa15.79■□□□□ 0.12
LINC00339-202ENST00000416769 LHX8Q68G74 356 aa15.79■□□□□ 0.12
LINC00339-202ENST00000416769 ACER1Q8TDN7 264 aa15.79■□□□□ 0.12
LINC00339-202ENST00000416769 NUDT12Q9BQG2 462 aa15.79■□□□□ 0.12
LINC00339-202ENST00000416769 TBC1D2Q9BYX2 928 aa15.79■□□□□ 0.12
LINC00339-202ENST00000416769 SURF6O75683 361 aaKnown RBP15.78■□□□□ 0.12
LINC00339-202ENST00000416769 BAG3O95817 575 aa15.78■□□□□ 0.12
LINC00339-202ENST00000416769 COL6A1P12109 1028 aa15.78■□□□□ 0.12
LINC00339-202ENST00000416769 BMP8BP34820 402 aa15.78■□□□□ 0.12
LINC00339-202ENST00000416769 SSH3Q8TE77 659 aa15.78■□□□□ 0.12
LINC00339-202ENST00000416769 EAF2Q96CJ1 260 aaPredicted RBP15.78■□□□□ 0.12
LINC00339-202ENST00000416769 IDH1O75874 414 aaKnown RBP15.77■□□□□ 0.12
LINC00339-202ENST00000416769 ATP8B2P98198 1209 aa15.77■□□□□ 0.12
LINC00339-202ENST00000416769 MDM2Q00987 491 aaPredicted RBP15.77■□□□□ 0.12
LINC00339-202ENST00000416769 CCDC158Q5M9N0 1113 aa15.77■□□□□ 0.12
LINC00339-202ENST00000416769 FOXP4Q8IVH2 680 aaPredicted RBP15.77■□□□□ 0.12
LINC00339-202ENST00000416769 DEFB123Q8N688 67 aa15.77■□□□□ 0.12
LINC00339-202ENST00000416769 MAGEB6Q8N7X4 407 aa15.77■□□□□ 0.12
LINC00339-202ENST00000416769 SOCS4Q8WXH5 440 aa15.77■□□□□ 0.12
LINC00339-202ENST00000416769 TRIM34Q9BYJ4 488 aa15.77■□□□□ 0.12
LINC00339-202ENST00000416769 GPR108Q9NPR9 543 aa15.77■□□□□ 0.12
LINC00339-202ENST00000416769 C19orf81C9J6K1 198 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms