RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 ATICP31939 592 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 EIF5P55010 431 aaKnown RBP4.42□□□□□ -1.7
SF3B1-203ENST00000414174 DNM1Q05193 864 aaKnown RBP4.42□□□□□ -1.7
SF3B1-203ENST00000414174 PSMD2Q13200 908 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 BMS1Q14692 1282 aaKnown RBP4.42□□□□□ -1.7
SF3B1-203ENST00000414174 VPS72Q15906 364 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 PKN1Q16512 942 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 MAP9Q49MG5 647 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 CCDC92Q53HC0 331 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-203ENST00000414174 C1QTNF12Q5T7M4 302 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 LARP1BQ659C4 914 aaKnown RBP4.42□□□□□ -1.7
SF3B1-203ENST00000414174 CEP135Q66GS9 1140 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 KLHL10Q6JEL2 608 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 XKR5Q6UX68 686 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 SMAP1Q8IYB5 467 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-203ENST00000414174 SLC43A3Q8NBI5 491 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 PPM1EQ8WY54 764 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 CEP89Q96ST8 783 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 POP1Q99575 1024 aaKnown RBP4.42□□□□□ -1.7
SF3B1-203ENST00000414174 ARPC5LQ9BPX5 153 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 TINF2Q9BSI4 451 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 PBX4Q9BYU1 374 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 PDCL3Q9H2J4 239 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 CXorf56Q9H5V9 222 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 SH2B1Q9NRF2 756 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-203ENST00000414174 IFT57Q9NWB7 429 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 PRKAG2Q9UGJ0 569 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 POLIQ9UNA4 740 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 FANCIQ9NVI1 1328 aa4.42□□□□□ -1.7
SF3B1-203ENST00000414174 TMEM238LA0A1B0GVL6 79 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 PRRG2O14669 202 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 FSCN2O14926 492 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 MTA2O94776 668 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 LDHAP00338 332 aaKnown RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 F13BP05160 661 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 ATP2B1P20020 1258 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 MZF1P28698 734 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 CASQ1P31415 396 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 CLK1P49759 484 aaKnown RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 TERF1P54274 439 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 RAD51AP2Q09MP3 1159 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 ZNF211Q13398 564 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 ECM1Q16610 540 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 HGSNATQ68CP4 663 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 CC2D1AQ6P1N0 951 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 ZNF438Q7Z4V0 828 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 LMNTD2Q8IXW0 634 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 JDP2Q8WYK2 163 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 CCDC47Q96A33 483 aaKnown RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 CFAP53Q96M91 514 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 METTL22Q9BUU2 404 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 OSBPL1AQ9BXW6 950 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 LRRC27Q9C0I9 530 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 PAK6Q9NQU5 681 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 TYW1Q9NV66 732 aaKnown RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 NLRP2Q9NX02 1062 aa4.41□□□□□ -1.7
SF3B1-203ENST00000414174 FNDC3AQ9Y2H6 1198 aaKnown RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 ZCCHC6Q5VYS8 1495 aaKnown RBP4.41□□□□□ -1.7
SF3B1-203ENST00000414174 CARMIL2Q6F5E8 1435 aa4.4□□□□□ -1.7
SF3B1-203ENST00000414174 ANKRD33BA6NCL7 494 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 DDX3YO15523 660 aaKnown RBP4.4□□□□□ -1.71
SF3B1-203ENST00000414174 VAMP4O75379 141 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 ZNF865P0CJ78 1059 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-203ENST00000414174 KCNA2P16389 499 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 NAT1P18440 290 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 CDC27P30260 824 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 CDC25BP30305 580 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 RBL2Q08999 1139 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 DCTN1Q14203 1278 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 NFE2L2Q16236 605 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 TSNAXIP1Q2TAA8 658 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 ZC3H12AQ5D1E8 599 aaKnown RBP4.4□□□□□ -1.71
SF3B1-203ENST00000414174 CCDC73Q6ZRK6 1079 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 FBXO33Q7Z6M2 555 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 FILIP1Q7Z7B0 1213 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 FAM43AQ8N2R8 423 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 NGEFQ8N5V2 710 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 SAMD3Q8N6K7 520 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 NGDNQ8NEJ9 315 aaKnown RBP4.4□□□□□ -1.71
SF3B1-203ENST00000414174 BHLHE22Q8NFJ8 381 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-203ENST00000414174 UBASH3BQ8TF42 649 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 FRS2Q8WU20 508 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 GOLGA1Q92805 767 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 KRTAP9-3Q9BYQ3 159 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 ADAM19Q9H013 955 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 ZSWIM4Q9H7M6 989 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 ANO2Q9NQ90 1003 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 CCDC87Q9NVE4 849 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 DZANK1Q9NVP4 752 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 FOXD3Q9UJU5 478 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-203ENST00000414174 LZTS1Q9Y250 596 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 NCANO14594 1321 aa4.4□□□□□ -1.71
SF3B1-203ENST00000414174 MEGF11A6BM72 1044 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 EREGO14944 169 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 KIF1CO43896 1103 aaKnown RBP4.39□□□□□ -1.71
SF3B1-203ENST00000414174 DNAJC6O75061 913 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 TNFRSF21O75509 655 aa4.39□□□□□ -1.71
SF3B1-203ENST00000414174 SMNDC1O75940 238 aaKnown RBP eCLIP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms