RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 FOXP1Q9H334 677 aaPredicted RBP23.26■■□□□ 1.31
USP39-204ENST00000409766 USP17L8P0C7I0 530 aa23.26■■□□□ 1.31
USP39-204ENST00000409766 HMGB2P26583 209 aaKnown RBP23.26■■□□□ 1.31
USP39-204ENST00000409766 PPP4CP60510 307 aa23.26■■□□□ 1.31
USP39-204ENST00000409766 DIXDC1Q155Q3 683 aa23.26■■□□□ 1.31
USP39-204ENST00000409766 SH3RF3Q8TEJ3 882 aaPredicted RBP23.26■■□□□ 1.31
USP39-204ENST00000409766 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.26■■□□□ 1.31
USP39-204ENST00000409766 ZNF500O60304 480 aaPredicted RBP23.25■■□□□ 1.31
USP39-204ENST00000409766 DDAH1O94760 285 aa23.25■■□□□ 1.31
USP39-204ENST00000409766 STX1AQ16623 288 aa23.25■■□□□ 1.31
USP39-204ENST00000409766 C12orf60Q5U649 245 aa23.25■■□□□ 1.31
USP39-204ENST00000409766 JMYQ8N9B5 988 aa23.25■■□□□ 1.31
USP39-204ENST00000409766 RBM28Q9NW13 759 aaKnown RBP23.25■■□□□ 1.31
USP39-204ENST00000409766 NMT2O60551 498 aa23.25■■□□□ 1.31
USP39-204ENST00000409766 BAG3O95817 575 aa23.25■■□□□ 1.31
USP39-204ENST00000409766 FAM47AQ5JRC9 791 aa23.25■■□□□ 1.31
USP39-204ENST00000409766 SDF4Q9BRK5 362 aa23.25■■□□□ 1.31
USP39-204ENST00000409766 LRRC37AA6NMS7 1700 aa23.25■■□□□ 1.31
USP39-204ENST00000409766 LTBP1Q14766 1721 aa23.25■■□□□ 1.31
USP39-204ENST00000409766 MROH7-TTC4A0A0A0MT08 1334 aa23.24■■□□□ 1.31
USP39-204ENST00000409766 RXRBP28702 533 aa23.24■■□□□ 1.31
USP39-204ENST00000409766 USP5P45974 858 aa23.24■■□□□ 1.31
USP39-204ENST00000409766 PKN1Q16512 942 aa23.24■■□□□ 1.31
USP39-204ENST00000409766 POLLQ9UGP5 575 aa23.24■■□□□ 1.31
USP39-204ENST00000409766 PRPF3O43395 683 aaKnown RBP23.23■■□□□ 1.31
USP39-204ENST00000409766 ZNF202O95125 648 aa23.23■■□□□ 1.31
USP39-204ENST00000409766 LDHCP07864 332 aa23.23■■□□□ 1.31
USP39-204ENST00000409766 PFKFB1P16118 471 aa23.23■■□□□ 1.31
USP39-204ENST00000409766 TOB1P50616 345 aaPredicted RBP23.23■■□□□ 1.31
USP39-204ENST00000409766 TBC1D16Q8TBP0 767 aa23.23■■□□□ 1.31
USP39-204ENST00000409766 ANKRD31Q8N7Z5 1873 aa23.23■■□□□ 1.31
USP39-204ENST00000409766 PLEKHA8P1O95397 391 aa23.23■■□□□ 1.31
USP39-204ENST00000409766 IQCB1Q15051 598 aa23.23■■□□□ 1.31
USP39-204ENST00000409766 C11orf57Q6ZUT1 292 aaPredicted RBP23.23■■□□□ 1.31
USP39-204ENST00000409766 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.23■■□□□ 1.312e-8■■■□□ 16.1
USP39-204ENST00000409766 NT5C2P49902 561 aa23.22■■□□□ 1.31
USP39-204ENST00000409766 AKAP17AQ02040 695 aaKnown RBP23.22■■□□□ 1.31
USP39-204ENST00000409766 SHISA4Q96DD7 197 aa23.22■■□□□ 1.31
USP39-204ENST00000409766 RTFDC1Q9BY42 306 aaPredicted RBP23.22■■□□□ 1.31
USP39-204ENST00000409766 HPSEQ9Y251 543 aa23.22■■□□□ 1.31
USP39-204ENST00000409766 ROBO3Q96MS0 1386 aa23.22■■□□□ 1.31
USP39-204ENST00000409766 NAV1Q8NEY1 1877 aa23.22■■□□□ 1.31
USP39-204ENST00000409766 CDK5RAP2Q96SN8 1893 aa23.22■■□□□ 1.31
USP39-204ENST00000409766 FAM237AA0A1B0GTK4 181 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 TSPY2A6NKD2 308 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 SHC4Q6S5L8 630 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 TMTC3Q6ZXV5 915 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 ANO10Q9NW15 660 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 NR5A1Q13285 461 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 ZNF827Q17R98 1081 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 RILPL1Q5EBL4 403 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 RCSD1Q6JBY9 416 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 TMC4Q7Z404 712 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 ERCC4Q92889 916 aaPredicted RBP23.21■■□□□ 1.31
USP39-204ENST00000409766 NOL10Q9BSC4 688 aaKnown RBP23.21■■□□□ 1.31
USP39-204ENST00000409766 KIAA1468Q9P260 1216 aa23.21■■□□□ 1.31
USP39-204ENST00000409766 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.2■■□□□ 1.3
USP39-204ENST00000409766 SLC4A8Q2Y0W8 1093 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 CERS3Q8IU89 383 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 MPNDQ8N594 471 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 OXER1Q8TDS5 423 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 V9GY48 417 aaPredicted RBP23.2■■□□□ 1.3
USP39-204ENST00000409766 NRXN2Q9P2S2 1712 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 PLSCR1O15162 318 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 CUTAO60888 179 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 XBP1P17861 261 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 RESP18Q5W5W9 173 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 SP8Q8IXZ3 490 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 TGFBRAP1Q8WUH2 860 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 TIGD1Q96MW7 591 aa23.2■■□□□ 1.3
USP39-204ENST00000409766 RGS17Q9UGC6 210 aaPredicted RBP23.2■■□□□ 1.3
USP39-204ENST00000409766 AKT1S1Q96B36 256 aa23.19■■□□□ 1.3
USP39-204ENST00000409766 PHF20Q9BVI0 1012 aa23.19■■□□□ 1.3
USP39-204ENST00000409766 A0A087WWV3 80 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 GPR75-ASB3A0A0A6YYF3 556 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 TFAP4Q01664 338 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 NLGN1Q8N2Q7 840 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 CTCFLQ8NI51 663 aaPredicted RBP23.18■■□□□ 1.3
USP39-204ENST00000409766 DYNLL2Q96FJ2 89 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 CLIC6Q96NY7 704 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 VPS54Q9P1Q0 977 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 CNTNAP5Q8WYK1 1306 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 hCG_1642624A0A1W2PR95 340 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 C6orf229H3BNL8 230 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 PPEF1O14829 653 aaPredicted RBP23.18■■□□□ 1.3
USP39-204ENST00000409766 SYKP43405 635 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 COL23A1Q86Y22 540 aaPredicted RBP23.18■■□□□ 1.3
USP39-204ENST00000409766 SRBD1Q8N5C6 995 aaKnown RBP23.18■■□□□ 1.3
USP39-204ENST00000409766 IL17RBQ9NRM6 502 aa23.18■■□□□ 1.3
USP39-204ENST00000409766 BTDP43251 543 aa23.17■■□□□ 1.3
USP39-204ENST00000409766 MFSD14BQ5SR56 506 aa23.17■■□□□ 1.3
USP39-204ENST00000409766 PLA2G4DQ86XP0 818 aa23.17■■□□□ 1.3
USP39-204ENST00000409766 DGKHQ86XP1 1220 aa23.17■■□□□ 1.3
USP39-204ENST00000409766 AMOTL1Q8IY63 956 aa23.17■■□□□ 1.3
USP39-204ENST00000409766 KRI1Q8N9T8 703 aaKnown RBP23.17■■□□□ 1.3
USP39-204ENST00000409766 ANKS1AQ92625 1134 aa23.17■■□□□ 1.3
USP39-204ENST00000409766 FAM163AQ96GL9 167 aaPredicted RBP23.17■■□□□ 1.3
USP39-204ENST00000409766 APBA3O96018 575 aa23.16■■□□□ 1.3
USP39-204ENST00000409766 TBC1D22AQ8WUA7 517 aa23.16■■□□□ 1.3
USP39-204ENST00000409766 ZNF830Q96NB3 372 aaPredicted RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms