RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 TCIRG1Q13488 830 aa9.45□□□□□ -0.9
SNX13-201ENST00000409076 USPL1Q5W0Q7 1092 aa9.45□□□□□ -0.9
SNX13-201ENST00000409076 ZNF654Q8IZM8 581 aa9.45□□□□□ -0.9
SNX13-201ENST00000409076 SPATA5Q8NB90 893 aa9.45□□□□□ -0.9
SNX13-201ENST00000409076 MMRN2Q9H8L6 949 aa9.45□□□□□ -0.9
SNX13-201ENST00000409076 GNL3LQ9NVN8 582 aaKnown RBP9.45□□□□□ -0.9
SNX13-201ENST00000409076 TNKSO95271 1327 aa9.45□□□□□ -0.9
SNX13-201ENST00000409076 SH3TC1Q8TE82 1336 aa9.45□□□□□ -0.9
SNX13-201ENST00000409076 H7C1W4 665 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 VEGFAP15692 232 aaPredicted RBP9.44□□□□□ -0.9
SNX13-201ENST00000409076 XBP1P17861 261 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 SPTY2D1Q68D10 685 aaPredicted RBP9.44□□□□□ -0.9
SNX13-201ENST00000409076 SMCR8Q8TEV9 937 aaPredicted RBP9.44□□□□□ -0.9
SNX13-201ENST00000409076 BTG4Q9NY30 223 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 SOS2Q07890 1332 aaPredicted RBP9.44□□□□□ -0.9
SNX13-201ENST00000409076 KIF2AO00139 706 aaPredicted RBP9.44□□□□□ -0.9
SNX13-201ENST00000409076 WNT7AO00755 349 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 SH2B2O14492 632 aaPredicted RBP9.44□□□□□ -0.9
SNX13-201ENST00000409076 CAVIN2O95810 425 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 TRIM21P19474 475 aaKnown RBP9.44□□□□□ -0.9
SNX13-201ENST00000409076 BMP6P22004 513 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 MTIF2P46199 727 aaKnown RBP9.44□□□□□ -0.9
SNX13-201ENST00000409076 PPARAQ07869 468 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 DYMQ7RTS9 669 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 SLC51AQ86UW1 340 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 VSTM4Q8IW00 320 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 BRMS1Q9HCU9 246 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 POLR3EQ9NVU0 708 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 ZSCAN26Q16670 478 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 LONRF2Q1L5Z9 754 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 RAD9BQ6WBX8 426 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 CALCOCO1Q9P1Z2 691 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 ZNF219Q9P2Y4 722 aaPredicted RBP9.44□□□□□ -0.9
SNX13-201ENST00000409076 ZMYM6O95789 1325 aa9.44□□□□□ -0.9
SNX13-201ENST00000409076 NEURL4Q96JN8 1562 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 USP17L12C9JPN9 530 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 USP17L21D6R901 530 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 ARHGAP6O43182 974 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 SLC7A5Q01650 507 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 PTGDRQ13258 359 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 TDRD12Q587J7 1177 aaKnown RBP9.43□□□□□ -0.9
SNX13-201ENST00000409076 FOXR1Q6PIV2 292 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 SARM1Q6SZW1 724 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 TTLL11Q8NHH1 800 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 AK7Q96M32 723 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 ABCB6Q9NP58 842 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 MAGEC2Q9UBF1 373 aaPredicted RBP9.43□□□□□ -0.9
SNX13-201ENST00000409076 IL2RBP14784 551 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 ADD2P35612 726 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 CATIPQ7Z7H3 387 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 GPATCH11Q8N954 259 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 CTCFLQ8NI51 663 aaPredicted RBP9.43□□□□□ -0.9
SNX13-201ENST00000409076 CHP1Q99653 195 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 EHD2Q9NZN4 543 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 CTAGE15A4D2H0 777 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 CTAGE9A4FU28 777 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 CTAGE8P0CG41 777 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 STAT6P42226 847 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 KLK7P49862 253 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 GABPB1Q06547 395 aaPredicted RBP9.43□□□□□ -0.9
SNX13-201ENST00000409076 LLGL1Q15334 1064 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 CCDC96Q2M329 555 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 CCDC122Q5T0U0 273 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 AKNAD1Q5T1N1 836 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 CTAGE6Q86UF2 777 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 DNAAF5Q86Y56 855 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 CTAGE4Q8IX94 777 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 IPO4Q8TEX9 1081 aaKnown RBP9.43□□□□□ -0.9
SNX13-201ENST00000409076 KCNB2Q92953 911 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 EPB41L4AQ9HCS5 686 aaPredicted RBP9.43□□□□□ -0.9
SNX13-201ENST00000409076 BCCIPQ9P287 314 aaKnown RBP eCLIP9.43□□□□□ -0.98e-7■■■■□ 21.9
SNX13-201ENST00000409076 FHOD1Q9Y613 1164 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 MORC2Q9Y6X9 1032 aaPredicted RBP9.43□□□□□ -0.9
SNX13-201ENST00000409076 DIP2AQ14689 1571 aa9.43□□□□□ -0.9
SNX13-201ENST00000409076 PALLDQ8WX93 1383 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 FANCGO15287 622 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 CCP110O43303 1012 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 ZEB2O60315 1214 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 CUTAO60888 179 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 ZFYP08048 801 aaPredicted RBP9.42□□□□□ -0.9
SNX13-201ENST00000409076 CD44P16070 742 aaKnown RBP9.42□□□□□ -0.9
SNX13-201ENST00000409076 ATP6V1AP38606 617 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 FXR1P51114 621 aaKnown RBP eCLIP9.42□□□□□ -0.9
SNX13-201ENST00000409076 CACNB1Q02641 598 aaPredicted RBP9.42□□□□□ -0.9
SNX13-201ENST00000409076 CUL4BQ13620 913 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 PIGBQ92521 554 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 GJA10Q969M2 543 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 UBA5Q9GZZ9 404 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 MKNK2Q9HBH9 465 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 FAM207AQ9NSI2 230 aaPredicted RBP9.42□□□□□ -0.9
SNX13-201ENST00000409076 LCMT1Q9UIC8 334 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 ZNF185O15231 689 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 CDC25BP30305 580 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 LETM2Q2VYF4 491 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 KCTD16Q68DU8 428 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 DYNLL2Q96FJ2 89 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 CRACR2AQ9BSW2 395 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 LY9Q9HBG7 655 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 INTS13Q9NVM9 706 aa9.42□□□□□ -0.9
SNX13-201ENST00000409076 MCM9Q9NXL9 1143 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms