RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 WDR66Q8TBY9 1149 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 TEKT1Q969V4 418 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 GPATCH3Q96I76 525 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 BCL11AQ9H165 835 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 SERPINA10Q9UK55 444 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 SUGT1Q9Y2Z0 365 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 KIAA0100Q14667 2235 aaKnown RBP11.17□□□□□ -0.62
VPS53-203ENST00000401468 ERC2O15083 957 aa11.16□□□□□ -0.62
VPS53-203ENST00000401468 PPP1R12BO60237 982 aaPredicted RBP11.16□□□□□ -0.62
VPS53-203ENST00000401468 GLRX3O76003 335 aaKnown RBP11.16□□□□□ -0.62
VPS53-203ENST00000401468 CYP2E1P05181 493 aaPredicted RBP11.16□□□□□ -0.62
VPS53-203ENST00000401468 MMP14P50281 582 aa11.16□□□□□ -0.62
VPS53-203ENST00000401468 CAP1Q01518 475 aa11.16□□□□□ -0.62
VPS53-203ENST00000401468 TMED8Q6PL24 325 aaPredicted RBP11.16□□□□□ -0.62
VPS53-203ENST00000401468 ZFPM1Q8IX07 1006 aa11.16□□□□□ -0.62
VPS53-203ENST00000401468 TBC1D22AQ8WUA7 517 aa11.16□□□□□ -0.62
VPS53-203ENST00000401468 ZKSCAN4Q969J2 545 aaPredicted RBP11.16□□□□□ -0.62
VPS53-203ENST00000401468 OPTNQ96CV9 577 aa11.16□□□□□ -0.62
VPS53-203ENST00000401468 ZFRQ96KR1 1074 aaKnown RBP11.16□□□□□ -0.62
VPS53-203ENST00000401468 SAGE1Q9NXZ1 904 aa11.16□□□□□ -0.62
VPS53-203ENST00000401468 DAGLAQ9Y4D2 1042 aa11.16□□□□□ -0.62
VPS53-203ENST00000401468 ARIH1Q9Y4X5 557 aaPredicted RBP11.16□□□□□ -0.62
VPS53-203ENST00000401468 BAZ2AQ9UIF9 1905 aaKnown RBP11.15□□□□□ -0.62
VPS53-203ENST00000401468 GPR25O00155 361 aa11.15□□□□□ -0.62
VPS53-203ENST00000401468 IREB2P48200 963 aaKnown RBP11.15□□□□□ -0.62
VPS53-203ENST00000401468 NFIAQ12857 509 aa11.15□□□□□ -0.62
VPS53-203ENST00000401468 VGLL4Q14135 290 aa11.15□□□□□ -0.62
VPS53-203ENST00000401468 SUPT20HL1Q3ZLR7 823 aa11.15□□□□□ -0.62
VPS53-203ENST00000401468 APOBEC3HQ6NTF7 200 aaKnown RBP11.15□□□□□ -0.62
VPS53-203ENST00000401468 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.15□□□□□ -0.62
VPS53-203ENST00000401468 PTPN18Q99952 460 aa11.15□□□□□ -0.62
VPS53-203ENST00000401468 MRIQ9BWK5 157 aa11.15□□□□□ -0.62
VPS53-203ENST00000401468 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.15□□□□□ -0.62
VPS53-203ENST00000401468 RFX7Q2KHR2 1363 aa11.15□□□□□ -0.63
VPS53-203ENST00000401468 INPP5BP32019 993 aa11.14□□□□□ -0.63
VPS53-203ENST00000401468 ZAP70P43403 619 aa11.14□□□□□ -0.63
VPS53-203ENST00000401468 TM4SF4P48230 202 aa11.14□□□□□ -0.63
VPS53-203ENST00000401468 TSHZ3Q63HK5 1081 aa11.14□□□□□ -0.63
VPS53-203ENST00000401468 CDC42EP5Q6NZY7 148 aa11.14□□□□□ -0.63
VPS53-203ENST00000401468 TBC1D9Q6ZT07 1266 aa11.14□□□□□ -0.63
VPS53-203ENST00000401468 CTU1Q7Z7A3 348 aaKnown RBP11.14□□□□□ -0.63
VPS53-203ENST00000401468 ZGPATQ8N5A5 531 aaKnown RBP11.14□□□□□ -0.63
VPS53-203ENST00000401468 ZDHHC15Q96MV8 337 aa11.14□□□□□ -0.63
VPS53-203ENST00000401468 ABCF2Q9UG63 623 aa11.14□□□□□ -0.63
VPS53-203ENST00000401468 DDX60LQ5H9U9 1706 aaKnown RBP11.14□□□□□ -0.63
VPS53-203ENST00000401468 RBBP6Q7Z6E9 1792 aaKnown RBP11.13□□□□□ -0.63
VPS53-203ENST00000401468 LDHBP07195 334 aaKnown RBP11.13□□□□□ -0.63
VPS53-203ENST00000401468 GSPT1P15170 499 aaKnown RBP11.13□□□□□ -0.63
VPS53-203ENST00000401468 HDLBPQ00341 1268 aaKnown RBP11.13□□□□□ -0.63
VPS53-203ENST00000401468 SREBF2Q12772 1141 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 CRHR2Q13324 411 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 TNFAIP1Q13829 316 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 TTF1Q15361 905 aaPredicted RBP11.13□□□□□ -0.63
VPS53-203ENST00000401468 MAP3K11Q16584 847 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 TTC22Q5TAA0 569 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 ANKRD13AQ8IZ07 590 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 CD99L2Q8TCZ2 262 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 ZNF384Q8TF68 577 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 WRNIP1Q96S55 665 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 BOLA2Q9H3K6 86 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 SNRKQ9NRH2 765 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 PAG1Q9NWQ8 432 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 HPS5Q9UPZ3 1129 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 PPP2R3BQ9Y5P8 575 aa11.13□□□□□ -0.63
VPS53-203ENST00000401468 NAV1Q8NEY1 1877 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 CUL9Q8IWT3 2517 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 MKI67P46013 3256 aaKnown RBP11.12□□□□□ -0.63
VPS53-203ENST00000401468 SOWAHBA6NEL2 793 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 FAM196BA6NMK8 535 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 MYCP01106 439 aaPredicted RBP11.12□□□□□ -0.63
VPS53-203ENST00000401468 TNNI2P48788 182 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 PICALMQ13492 652 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 HABP4Q5JVS0 413 aaKnown RBP11.12□□□□□ -0.63
VPS53-203ENST00000401468 CCDC84Q86UT8 332 aaPredicted RBP11.12□□□□□ -0.63
VPS53-203ENST00000401468 PACS2Q86VP3 889 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 KBTBD3Q8NAB2 608 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS53-203ENST00000401468 BRI3BPQ8WY22 251 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 ANTXR1Q9H6X2 564 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 PIH1D3Q9NQM4 214 aaKnown RBP11.12□□□□□ -0.63
VPS53-203ENST00000401468 USP40Q9NVE5 1235 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 TMOD2Q9NZR1 351 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 SNCAIPQ9Y6H5 919 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 BRCA2P51587 3418 aa11.12□□□□□ -0.63
VPS53-203ENST00000401468 CCL15-CCL14A0A0B4J2E2 113 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 MANSC4A6NHS7 340 aaPredicted RBP11.11□□□□□ -0.63
VPS53-203ENST00000401468 DLL1O00548 723 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 FKTNO75072 461 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 CCL15Q16663 113 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 BMP2KLQ5H9B9 411 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 SPTY2D1Q68D10 685 aaPredicted RBP11.11□□□□□ -0.63
VPS53-203ENST00000401468 SKAP1Q86WV1 359 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 FAM43AQ8N2R8 423 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 NSUN4Q96CB9 384 aaKnown RBP11.11□□□□□ -0.63
VPS53-203ENST00000401468 EVI5LQ96CN4 794 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 EDC3Q96F86 508 aaKnown RBP11.11□□□□□ -0.63
VPS53-203ENST00000401468 FAM198AQ9UFP1 575 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 CSADQ9Y600 493 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 NDUFB9Q9Y6M9 179 aa11.11□□□□□ -0.63
VPS53-203ENST00000401468 GAKO14976 1311 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms