RNA–Protein interactions for RNA: ENST00000399523.5

UFD1-202, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best) BASIC

Gene UFD1, Length 1,007 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-202ENST00000399523 PLEKHH3Q7Z736 793 aa22.36■■□□□ 1.17
UFD1-202ENST00000399523 MAFAQ8NHW3 353 aaPredicted RBP22.36■■□□□ 1.17
UFD1-202ENST00000399523 SEMA6BQ9H3T3 888 aa22.36■■□□□ 1.17
UFD1-202ENST00000399523 LDHCP07864 332 aa22.35■■□□□ 1.17
UFD1-202ENST00000399523 ASNSP08243 561 aa22.35■■□□□ 1.17
UFD1-202ENST00000399523 POTEEQ6S8J3 1075 aa22.35■■□□□ 1.17
UFD1-202ENST00000399523 GTF3C2Q8WUA4 911 aaPredicted RBP22.35■■□□□ 1.17
UFD1-202ENST00000399523 NSUN4Q96CB9 384 aaKnown RBP22.35■■□□□ 1.17
UFD1-202ENST00000399523 PI4KBQ9UBF8 816 aa22.35■■□□□ 1.17
UFD1-202ENST00000399523 PA2G4Q9UQ80 394 aaKnown RBP22.35■■□□□ 1.17
UFD1-202ENST00000399523 GSTO1P78417 241 aa22.34■■□□□ 1.17
UFD1-202ENST00000399523 CCAR1Q8IX12 1150 aaKnown RBP22.34■■□□□ 1.17
UFD1-202ENST00000399523 SSH1Q8WYL5 1049 aa22.34■■□□□ 1.17
UFD1-202ENST00000399523 COPRSQ9NQ92 184 aa22.34■■□□□ 1.17
UFD1-202ENST00000399523 USP17L10C9JJH3 530 aa22.33■■□□□ 1.17
UFD1-202ENST00000399523 UBTFL1P0CB47 393 aaPredicted RBP22.33■■□□□ 1.17
UFD1-202ENST00000399523 JAG1P78504 1218 aa22.33■■□□□ 1.17
UFD1-202ENST00000399523 XAGE2Q96GT9 111 aa22.33■■□□□ 1.17
UFD1-202ENST00000399523 LTBP2Q14767 1821 aa22.33■■□□□ 1.16
UFD1-202ENST00000399523 SIPA1L1O43166 1804 aa22.32■■□□□ 1.16
UFD1-202ENST00000399523 MAP2K5Q13163 448 aa22.32■■□□□ 1.16
UFD1-202ENST00000399523 LPAR1Q92633 364 aa22.32■■□□□ 1.16
UFD1-202ENST00000399523 DHX36Q9H2U1 1008 aaKnown RBP22.32■■□□□ 1.16
UFD1-202ENST00000399523 GINM1Q9NU53 330 aa22.32■■□□□ 1.16
UFD1-202ENST00000399523 PRKAG2Q9UGJ0 569 aa22.32■■□□□ 1.16
UFD1-202ENST00000399523 A0A1B0GUL7 405 aa22.31■■□□□ 1.16
UFD1-202ENST00000399523 MSCO60682 206 aa22.31■■□□□ 1.16
UFD1-202ENST00000399523 MVPQ14764 893 aaKnown RBP22.31■■□□□ 1.16
UFD1-202ENST00000399523 SHHQ15465 462 aa22.31■■□□□ 1.16
UFD1-202ENST00000399523 MFSD14CQ5VZR4 134 aa22.31■■□□□ 1.16
UFD1-202ENST00000399523 METTL16Q86W50 562 aaKnown RBP22.31■■□□□ 1.16
UFD1-202ENST00000399523 TEX11Q8IYF3 940 aa22.31■■□□□ 1.16
UFD1-202ENST00000399523 EDC3Q96F86 508 aaKnown RBP22.31■■□□□ 1.16
UFD1-202ENST00000399523 HMG20BQ9P0W2 317 aa22.31■■□□□ 1.16
UFD1-202ENST00000399523 DDX20Q9UHI6 824 aaKnown RBP22.31■■□□□ 1.16
UFD1-202ENST00000399523 ZNF521Q96K83 1311 aa22.31■■□□□ 1.16
UFD1-202ENST00000399523 DNM1LO00429 736 aa22.3■■□□□ 1.16
UFD1-202ENST00000399523 ATN1P54259 1190 aaPredicted RBP22.3■■□□□ 1.16
UFD1-202ENST00000399523 PAGR1Q9BTK6 254 aa22.3■■□□□ 1.16
UFD1-202ENST00000399523 FLRT1Q9NZU1 646 aa22.3■■□□□ 1.16
UFD1-202ENST00000399523 AKAP2Q9Y2D5 859 aa22.3■■□□□ 1.16
UFD1-202ENST00000399523 RTP1P59025 263 aa22.29■■□□□ 1.16
UFD1-202ENST00000399523 SMAD3P84022 425 aaKnown RBP22.29■■□□□ 1.16
UFD1-202ENST00000399523 TBC1D9Q6ZT07 1266 aa22.29■■□□□ 1.16
UFD1-202ENST00000399523 SPATA5Q8NB90 893 aa22.29■■□□□ 1.16
UFD1-202ENST00000399523 SYMPKQ92797 1274 aaKnown RBP22.29■■□□□ 1.16
UFD1-202ENST00000399523 TTYH1Q9H313 450 aaPredicted RBP22.29■■□□□ 1.16
UFD1-202ENST00000399523 DNAJC18Q9H819 358 aa22.29■■□□□ 1.16
UFD1-202ENST00000399523 RABGAP1Q9Y3P9 1069 aa22.29■■□□□ 1.16
UFD1-202ENST00000399523 RLFQ13129 1914 aa22.29■■□□□ 1.16
UFD1-202ENST00000399523 GLRX3O76003 335 aaKnown RBP22.28■■□□□ 1.16
UFD1-202ENST00000399523 C9orf50Q5SZB4 431 aa22.28■■□□□ 1.16
UFD1-202ENST00000399523 FOXP4Q8IVH2 680 aaPredicted RBP22.28■■□□□ 1.16
UFD1-202ENST00000399523 SH3RF3Q8TEJ3 882 aaPredicted RBP22.28■■□□□ 1.16
UFD1-202ENST00000399523 MYLIPQ8WY64 445 aa22.28■■□□□ 1.16
UFD1-202ENST00000399523 EMILIN3Q9NT22 766 aa22.28■■□□□ 1.16
UFD1-202ENST00000399523 HDAC5Q9UQL6 1122 aa22.28■■□□□ 1.16
UFD1-202ENST00000399523 SLC15A5A6NIM6 579 aa22.27■■□□□ 1.16
UFD1-202ENST00000399523 CNMDO75829 334 aa22.27■■□□□ 1.16
UFD1-202ENST00000399523 HOXC6P09630 235 aa22.27■■□□□ 1.16
UFD1-202ENST00000399523 CCNA1P78396 465 aa22.27■■□□□ 1.16
UFD1-202ENST00000399523 SHROOM1Q2M3G4 852 aaPredicted RBP22.27■■□□□ 1.16
UFD1-202ENST00000399523 PI16Q6UXB8 463 aa22.27■■□□□ 1.16
UFD1-202ENST00000399523 RAI14Q9P0K7 980 aa22.27■■□□□ 1.16
UFD1-202ENST00000399523 ZBTB21Q9ULJ3 1066 aa22.27■■□□□ 1.16
UFD1-202ENST00000399523 NCOR1O75376 2440 aa22.27■■□□□ 1.16
UFD1-202ENST00000399523 IGHA2P01877 340 aa22.26■■□□□ 1.15
UFD1-202ENST00000399523 TFCP2Q12800 502 aa22.26■■□□□ 1.15
UFD1-202ENST00000399523 USP17L2Q6R6M4 530 aa22.26■■□□□ 1.15
UFD1-202ENST00000399523 CWC22Q9HCG8 908 aaKnown RBP22.26■■□□□ 1.15
UFD1-202ENST00000399523 PTPREP23469 700 aa22.25■■□□□ 1.15
UFD1-202ENST00000399523 CNGA1P29973 690 aa22.25■■□□□ 1.15
UFD1-202ENST00000399523 ATP11BQ9Y2G3 1177 aa22.25■■□□□ 1.15
UFD1-202ENST00000399523 GDF11O95390 407 aa22.24■■□□□ 1.15
UFD1-202ENST00000399523 FOSL2P15408 326 aa22.24■■□□□ 1.15
UFD1-202ENST00000399523 ARID4AP29374 1257 aaPredicted RBP22.24■■□□□ 1.15
UFD1-202ENST00000399523 ATP2B2Q01814 1243 aa22.24■■□□□ 1.15
UFD1-202ENST00000399523 SLC39A5Q6ZMH5 540 aa22.24■■□□□ 1.15
UFD1-202ENST00000399523 TRPV1Q8NER1 839 aa22.24■■□□□ 1.15
UFD1-202ENST00000399523 C12orf42Q96LP6 360 aa22.24■■□□□ 1.15
UFD1-202ENST00000399523 NDUFB9Q9Y6M9 179 aa22.24■■□□□ 1.15
UFD1-202ENST00000399523 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.24■■□□□ 1.15
UFD1-202ENST00000399523 PLCG2P16885 1265 aa22.23■■□□□ 1.15
UFD1-202ENST00000399523 PPP4CP60510 307 aa22.23■■□□□ 1.15
UFD1-202ENST00000399523 GRB14Q14449 540 aa22.23■■□□□ 1.15
UFD1-202ENST00000399523 SNX17Q15036 470 aa22.23■■□□□ 1.15
UFD1-202ENST00000399523 ALDH1L2Q3SY69 923 aa22.23■■□□□ 1.15
UFD1-202ENST00000399523 CRACR2BQ8N4Y2 399 aaPredicted RBP22.23■■□□□ 1.15
UFD1-202ENST00000399523 ARRDC4Q8NCT1 418 aa22.23■■□□□ 1.15
UFD1-202ENST00000399523 NPLOC4Q8TAT6 608 aa22.23■■□□□ 1.15
UFD1-202ENST00000399523 BADQ92934 168 aa22.23■■□□□ 1.15
UFD1-202ENST00000399523 NEUROD6Q96NK8 337 aa22.23■■□□□ 1.15
UFD1-202ENST00000399523 NOL10Q9BSC4 688 aaKnown RBP22.23■■□□□ 1.15
UFD1-202ENST00000399523 CDK5RAP2Q96SN8 1893 aa22.23■■□□□ 1.15
UFD1-202ENST00000399523 TMEM265A0A087WTH1 108 aa22.22■■□□□ 1.15
UFD1-202ENST00000399523 USP17L15C9J2P7 530 aa22.22■■□□□ 1.15
UFD1-202ENST00000399523 USP17L13C9JLJ4 530 aa22.22■■□□□ 1.15
UFD1-202ENST00000399523 USP17L11C9JVI0 530 aa22.22■■□□□ 1.15
UFD1-202ENST00000399523 USP17L18D6R9N7 530 aa22.22■■□□□ 1.15
UFD1-202ENST00000399523 USP17L22D6RA61 530 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms