RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 KDM4AO75164 1064 aa16.73■□□□□ 0.27
SKA1-202ENST00000398452 CCDC178Q5BJE1 867 aa16.73■□□□□ 0.27
SKA1-202ENST00000398452 DCPSQ96C86 337 aaKnown RBP16.73■□□□□ 0.27
SKA1-202ENST00000398452 HOOK2Q96ED9 719 aa16.73■□□□□ 0.27
SKA1-202ENST00000398452 CSRNP1Q96S65 589 aa16.73■□□□□ 0.27
SKA1-202ENST00000398452 EHD4Q9H223 541 aa16.73■□□□□ 0.27
SKA1-202ENST00000398452 FAM198AQ9UFP1 575 aa16.73■□□□□ 0.27
SKA1-202ENST00000398452 TAF6LQ9Y6J9 622 aa16.73■□□□□ 0.27
SKA1-202ENST00000398452 NEDD4P46934 1319 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 WDR19Q8NEZ3 1342 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 PRDM1O75626 825 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 TSPY3P0CV98 308 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 TSPY8P0CW00 308 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 CPA1P15085 419 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 PLCD1P51178 756 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 C16orf86Q6ZW13 317 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 USP50Q70EL3 339 aaPredicted RBP16.72■□□□□ 0.27
SKA1-202ENST00000398452 NOL8Q76FK4 1167 aaKnown RBP16.72■□□□□ 0.27
SKA1-202ENST00000398452 TRPM4Q8TD43 1214 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 DYNLL2Q96FJ2 89 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 TMEM87BQ96K49 555 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 TSPYL2Q9H2G4 693 aaPredicted RBP16.72■□□□□ 0.27
SKA1-202ENST00000398452 ROBO3Q96MS0 1386 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 ADAMTSL1Q8N6G6 1762 aa16.72■□□□□ 0.27
SKA1-202ENST00000398452 BAZ2AQ9UIF9 1905 aaKnown RBP16.71■□□□□ 0.27
SKA1-202ENST00000398452 IFIT3O14879 490 aaKnown RBP16.71■□□□□ 0.27
SKA1-202ENST00000398452 CDK8P49336 464 aa16.71■□□□□ 0.27
SKA1-202ENST00000398452 ANGEL2Q5VTE6 544 aaKnown RBP16.71■□□□□ 0.27
SKA1-202ENST00000398452 SYNE3Q6ZMZ3 975 aa16.71■□□□□ 0.27
SKA1-202ENST00000398452 NFXL1Q6ZNB6 911 aa16.71■□□□□ 0.27
SKA1-202ENST00000398452 Q6ZUG5 572 aa16.71■□□□□ 0.27
SKA1-202ENST00000398452 MB21D2Q8IYB1 491 aaPredicted RBP16.71■□□□□ 0.27
SKA1-202ENST00000398452 CHMP4CQ96CF2 233 aa16.71■□□□□ 0.27
SKA1-202ENST00000398452 ZSCAN31Q96LW9 406 aaPredicted RBP16.71■□□□□ 0.27
SKA1-202ENST00000398452 MTA3Q9BTC8 594 aa16.71■□□□□ 0.27
SKA1-202ENST00000398452 NBPF3Q9H094 633 aa16.71■□□□□ 0.27
SKA1-202ENST00000398452 ABT1Q9ULW3 272 aaKnown RBP16.71■□□□□ 0.27
SKA1-202ENST00000398452 NAP1L2Q9ULW6 460 aaPredicted RBP16.71■□□□□ 0.27
SKA1-202ENST00000398452 COL2A1P02458 1487 aaPredicted RBP16.71■□□□□ 0.27
SKA1-202ENST00000398452 LAMA4Q16363 1823 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 K7ELQ4 463 aaPredicted RBP16.7■□□□□ 0.26
SKA1-202ENST00000398452 VEGFBP49765 207 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 AK2P54819 239 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 GRM1Q13255 1194 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 RASA3Q14644 834 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 TMEM67Q5HYA8 995 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 PPP4R3BQ5MIZ7 849 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 PAXIP1Q6ZW49 1069 aaPredicted RBP16.7■□□□□ 0.26
SKA1-202ENST00000398452 TMTC2Q8N394 836 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 TCEANC2Q96MN5 208 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 IPO9Q96P70 1041 aaKnown RBP16.7■□□□□ 0.26
SKA1-202ENST00000398452 ALDH8A1Q9H2A2 487 aaPredicted RBP16.7■□□□□ 0.26
SKA1-202ENST00000398452 GGA3Q9NZ52 723 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 HERC5Q9UII4 1024 aaKnown RBP16.7■□□□□ 0.26
SKA1-202ENST00000398452 LIMCH1Q9UPQ0 1083 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.7■□□□□ 0.26
SKA1-202ENST00000398452 PPP2R3BQ9Y5P8 575 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 PCNTO95613 3336 aa16.7■□□□□ 0.26
SKA1-202ENST00000398452 MYH1P12882 1939 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 CNTNAP1P78357 1384 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 ATRNL1Q5VV63 1379 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 DDTLA6NHG4 134 aaPredicted RBP16.69■□□□□ 0.26
SKA1-202ENST00000398452 CCDC69A6NI79 296 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 TRAF5O00463 557 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 EGFRP00533 1210 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 FGRP09769 529 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 TFAP4Q01664 338 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 WTAPQ15007 396 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 CHST3Q7LGC8 479 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 SULF1Q8IWU6 871 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 ZFPM1Q8IX07 1006 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 TNS4Q8IZW8 715 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 CCDC17Q96LX7 622 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.69■□□□□ 0.26
SKA1-202ENST00000398452 INCENPQ9NQS7 918 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 ZSWIM5Q9P217 1185 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 LAMB1P07942 1786 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 PITPNM2Q9BZ72 1349 aa16.69■□□□□ 0.26
SKA1-202ENST00000398452 ECM29Q5VYK3 1845 aa16.68■□□□□ 0.26
SKA1-202ENST00000398452 MPHOSPH10O00566 681 aaKnown RBP16.68■□□□□ 0.26
SKA1-202ENST00000398452 EXOSC10Q01780 885 aaKnown RBP16.68■□□□□ 0.26
SKA1-202ENST00000398452 DCAF15Q66K64 600 aa16.68■□□□□ 0.26
SKA1-202ENST00000398452 BRF1Q92994 677 aa16.68■□□□□ 0.26
SKA1-202ENST00000398452 TTC14Q96N46 770 aa16.68■□□□□ 0.26
SKA1-202ENST00000398452 LRRC2Q9BYS8 371 aa16.68■□□□□ 0.26
SKA1-202ENST00000398452 TBC1D2Q9BYX2 928 aa16.68■□□□□ 0.26
SKA1-202ENST00000398452 TMEM39BQ9GZU3 492 aa16.68■□□□□ 0.26
SKA1-202ENST00000398452 DEFB129Q9H1M3 183 aa16.68■□□□□ 0.26
SKA1-202ENST00000398452 CABP5Q9NP86 173 aa16.68■□□□□ 0.26
SKA1-202ENST00000398452 SH2B1Q9NRF2 756 aaPredicted RBP16.68■□□□□ 0.26
SKA1-202ENST00000398452 ANGEL1Q9UNK9 670 aaKnown RBP16.68■□□□□ 0.26
SKA1-202ENST00000398452 DEFB115Q30KQ5 88 aa16.67■□□□□ 0.26
SKA1-202ENST00000398452 SUPT20HL1Q3ZLR7 823 aa16.67■□□□□ 0.26
SKA1-202ENST00000398452 FAM47AQ5JRC9 791 aa16.67■□□□□ 0.26
SKA1-202ENST00000398452 ZC3H15Q8WU90 426 aaKnown RBP16.67■□□□□ 0.26
SKA1-202ENST00000398452 ZSCAN10Q96SZ4 725 aaPredicted RBP16.67■□□□□ 0.26
SKA1-202ENST00000398452 FOCADQ5VW36 1801 aa16.67■□□□□ 0.26
SKA1-202ENST00000398452 RASA1P20936 1047 aa16.66■□□□□ 0.26
SKA1-202ENST00000398452 GABPAQ06546 454 aa16.66■□□□□ 0.26
SKA1-202ENST00000398452 CERKLQ49MI3 558 aaPredicted RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms