RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 ATRNO75882 1429 aa9.46□□□□□ -0.9
PTPRD-204ENST00000397606 PABPC4Q13310 644 aaKnown RBP eCLIP9.46□□□□□ -0.9
PTPRD-204ENST00000397606 DIS3L2Q8IYB7 885 aaKnown RBP9.46□□□□□ -0.9
PTPRD-204ENST00000397606 PNPLA7Q6ZV29 1317 aa9.46□□□□□ -0.9
PTPRD-204ENST00000397606 GPATCH4Q5T3I0 446 aaKnown RBP9.45□□□□□ -0.9
PTPRD-204ENST00000397606 SLFN13Q68D06 897 aa9.45□□□□□ -0.9
PTPRD-204ENST00000397606 TDRD7Q8NHU6 1098 aaKnown RBP9.45□□□□□ -0.9
PTPRD-204ENST00000397606 NSUN4Q96CB9 384 aaKnown RBP9.45□□□□□ -0.9
PTPRD-204ENST00000397606 TDRD3Q9H7E2 651 aaKnown RBP9.45□□□□□ -0.9
PTPRD-204ENST00000397606 TPCN1Q9ULQ1 816 aa9.45□□□□□ -0.9
PTPRD-204ENST00000397606 KLRF2D3W0D1 207 aa9.45□□□□□ -0.9
PTPRD-204ENST00000397606 ADCY7P51828 1080 aa9.45□□□□□ -0.9
PTPRD-204ENST00000397606 LRRC47Q8N1G4 583 aaKnown RBP9.45□□□□□ -0.9
PTPRD-204ENST00000397606 MRPS27Q92552 414 aaKnown RBP9.45□□□□□ -0.9
PTPRD-204ENST00000397606 CNPY2Q9Y2B0 182 aa9.45□□□□□ -0.9
PTPRD-204ENST00000397606 SERPINC1P01008 464 aa9.45□□□□□ -0.9
PTPRD-204ENST00000397606 SYKP43405 635 aa9.45□□□□□ -0.9
PTPRD-204ENST00000397606 PDILTQ8N807 584 aa9.45□□□□□ -0.9
PTPRD-204ENST00000397606 DCP1AQ9NPI6 582 aaPredicted RBP9.45□□□□□ -0.9
PTPRD-204ENST00000397606 DDR1Q08345 913 aa9.45□□□□□ -0.9
PTPRD-204ENST00000397606 KRT25Q7Z3Z0 450 aa9.45□□□□□ -0.9
PTPRD-204ENST00000397606 PDIA3P30101 505 aaKnown RBP9.44□□□□□ -0.9
PTPRD-204ENST00000397606 CDK8P49336 464 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 STAG1Q8WVM7 1258 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 SYCE3A1L190 88 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 LIFRP42702 1097 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 ASPRV1Q53RT3 343 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 KRT40Q6A162 431 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 APOA5Q6Q788 366 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 CPXCR1Q8N123 301 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 ZSWIM5Q9P217 1185 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 IVNS1ABPQ9Y6Y0 642 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 OFD1O75665 1012 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 MARCKSP29966 332 aaPredicted RBP9.44□□□□□ -0.9
PTPRD-204ENST00000397606 HOXA10P31260 410 aaPredicted RBP9.44□□□□□ -0.9
PTPRD-204ENST00000397606 ADD1P35611 737 aaKnown RBP9.44□□□□□ -0.9
PTPRD-204ENST00000397606 USP14P54578 494 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 TBC1D10BQ4KMP7 808 aaPredicted RBP9.44□□□□□ -0.9
PTPRD-204ENST00000397606 KRT79Q5XKE5 535 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 MCTP2Q6DN12 878 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 DTHD1Q6ZMT9 781 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 ARMC9Q7Z3E5 817 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 KIFC2Q96AC6 838 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 PANK2Q9BZ23 570 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 IQCA1LA6NCM1 817 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 JAK2O60674 1132 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 MCM7P33993 719 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 KLHL40Q2TBA0 621 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 FCHSD1Q86WN1 690 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 DGKHQ86XP1 1220 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 APOBEC3FQ8IUX4 373 aaKnown RBP9.44□□□□□ -0.9
PTPRD-204ENST00000397606 DYNLL2Q96FJ2 89 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 TTC14Q96N46 770 aa9.44□□□□□ -0.9
PTPRD-204ENST00000397606 CYP2D7A0A087X1C5 515 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 IREB2P48200 963 aaKnown RBP9.43□□□□□ -0.9
PTPRD-204ENST00000397606 NONOQ15233 471 aaKnown RBP eCLIP9.43□□□□□ -0.9
PTPRD-204ENST00000397606 LETM2Q2VYF4 491 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 SMCR8Q8TEV9 937 aaPredicted RBP9.43□□□□□ -0.9
PTPRD-204ENST00000397606 CBFA2T2O43439 604 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 IDEP14735 1019 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 SLFNL1Q499Z3 407 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 HHIPL2Q6UWX4 724 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 STXBP4Q6ZWJ1 553 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 SMARCE1Q969G3 411 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 MTA3Q9BTC8 594 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 CD2APQ9Y5K6 639 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 ASNSP08243 561 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 CACNB3P54284 484 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 TMEM179Q6ZVK1 233 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 REXO1Q8N1G1 1221 aaKnown RBP9.43□□□□□ -0.9
PTPRD-204ENST00000397606 GSG1L2A8MUP6 293 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 GDF11O95390 407 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 FGFR2P21802 821 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 STAT6P42226 847 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 RSBN1LQ6PCB5 846 aaPredicted RBP9.43□□□□□ -0.9
PTPRD-204ENST00000397606 PIK3AP1Q6ZUJ8 805 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 SCLT1Q96NL6 688 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 TSG101Q99816 390 aa9.43□□□□□ -0.9
PTPRD-204ENST00000397606 SH2B2O14492 632 aaPredicted RBP9.42□□□□□ -0.9
PTPRD-204ENST00000397606 TM4SF1P30408 202 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 CHMP4BP1P59074 171 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 GALNT17Q6IS24 598 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 KRI1Q8N9T8 703 aaKnown RBP9.42□□□□□ -0.9
PTPRD-204ENST00000397606 BCL2L12Q9HB09 334 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 DAGLAQ9Y4D2 1042 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 FRMPD2Q68DX3 1309 aaPredicted RBP9.42□□□□□ -0.9
PTPRD-204ENST00000397606 RPS12P25398 132 aaKnown RBP9.42□□□□□ -0.9
PTPRD-204ENST00000397606 USH1GQ495M9 461 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 PHRF1Q9P1Y6 1649 aaKnown RBP9.42□□□□□ -0.9
PTPRD-204ENST00000397606 TMEM232C9JQI7 657 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 FGFR1OPO95684 399 aaKnown RBP9.42□□□□□ -0.9
PTPRD-204ENST00000397606 CAVIN2O95810 425 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 SCG2P13521 617 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 JAKMIP3Q5VZ66 844 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 NSMFQ6X4W1 530 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 C3orf67Q6ZVT6 689 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 RMND1Q9NWS8 449 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 VPS54Q9P1Q0 977 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 POLLQ9UGP5 575 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 OTUD7BQ6GQQ9 843 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms