RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 EPHB4P54760 987 aa11.76□□□□□ -0.53
NEDD9-203ENST00000397378 GPR142Q7Z601 462 aa11.76□□□□□ -0.53
NEDD9-203ENST00000397378 ZNF280CQ8ND82 737 aa11.76□□□□□ -0.53
NEDD9-203ENST00000397378 USP6NLQ92738 828 aa11.76□□□□□ -0.53
NEDD9-203ENST00000397378 IDI2Q9BXS1 227 aa11.76□□□□□ -0.53
NEDD9-203ENST00000397378 TSPYL2Q9H2G4 693 aaPredicted RBP11.76□□□□□ -0.53
NEDD9-203ENST00000397378 SALL1Q9NSC2 1324 aa11.76□□□□□ -0.53
NEDD9-203ENST00000397378 BDP1A6H8Y1 2624 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 PLXNA1Q9UIW2 1896 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 DDTLA6NHG4 134 aaPredicted RBP11.75□□□□□ -0.53
NEDD9-203ENST00000397378 EYA2O00167 538 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 ZBTB22O15209 634 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 LDHBP07195 334 aaKnown RBP11.75□□□□□ -0.53
NEDD9-203ENST00000397378 MORN1Q5T089 497 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 CCDC129Q6ZRS4 1044 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 SH3BP5LQ7L8J4 393 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 ARRDC4Q8NCT1 418 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 PORCNQ9H237 461 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 TXNRD2Q9NNW7 524 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 RFX7Q2KHR2 1363 aa11.75□□□□□ -0.53
NEDD9-203ENST00000397378 XIRP2A4UGR9 3374 aa11.74□□□□□ -0.53
NEDD9-203ENST00000397378 BMP1P13497 986 aa11.74□□□□□ -0.53
NEDD9-203ENST00000397378 RAG1P15918 1043 aa11.74□□□□□ -0.53
NEDD9-203ENST00000397378 ITGB8P26012 769 aa11.74□□□□□ -0.53
NEDD9-203ENST00000397378 RFX5P48382 616 aaPredicted RBP11.74□□□□□ -0.53
NEDD9-203ENST00000397378 MRE11P49959 708 aa11.74□□□□□ -0.53
NEDD9-203ENST00000397378 FPGSQ05932 587 aa11.74□□□□□ -0.53
NEDD9-203ENST00000397378 PICALMQ13492 652 aa11.74□□□□□ -0.53
NEDD9-203ENST00000397378 PLEKHH3Q7Z736 793 aa11.74□□□□□ -0.53
NEDD9-203ENST00000397378 P2RX7Q99572 595 aaKnown RBP11.74□□□□□ -0.53
NEDD9-203ENST00000397378 PAGR1Q9BTK6 254 aa11.74□□□□□ -0.53
NEDD9-203ENST00000397378 SALL2Q9Y467 1007 aaPredicted RBP11.74□□□□□ -0.53
NEDD9-203ENST00000397378 GAKO14976 1311 aa11.74□□□□□ -0.53
NEDD9-203ENST00000397378 FAM86C2PA6NEL3 165 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 FAM196BA6NMK8 535 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 SEMA3EO15041 775 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 KCNQ1P51787 676 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 HERVK_113P62684 666 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 ERVK-9P63128 1117 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 ERVK-24P63145 666 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 TFF2Q03403 129 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 MAP2K5Q13163 448 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 ADGRE1Q14246 886 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 SNX17Q15036 470 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 AAK1Q2M2I8 961 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 WDR78Q5VTH9 848 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 ANO1Q5XXA6 986 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 MICALL1Q8N3F8 863 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 FERMT2Q96AC1 680 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 EDC3Q96F86 508 aaKnown RBP11.73□□□□□ -0.53
NEDD9-203ENST00000397378 TBC1D2Q9BYX2 928 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 USP44Q9H0E7 712 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.73□□□□□ -0.532e-11■■□□□ 11.8
NEDD9-203ENST00000397378 GNL3LQ9NVN8 582 aaKnown RBP11.73□□□□□ -0.53
NEDD9-203ENST00000397378 TMOD4Q9NZQ9 345 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 FLRT1Q9NZU1 646 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 CXXC1Q9P0U4 656 aaPredicted RBP11.73□□□□□ -0.53
NEDD9-203ENST00000397378 FBXO3Q9UK99 471 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 DENND2AQ9ULE3 1009 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 TACC3Q9Y6A5 838 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 NDUFB9Q9Y6M9 179 aa11.73□□□□□ -0.53
NEDD9-203ENST00000397378 PTPRCP08575 1304 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 CLTBP09497 229 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 CYP2C19P33261 490 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 PBX2P40425 430 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 ADCYAP1R1P41586 468 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 ATP2B2Q01814 1243 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 Q3C1V9 767 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 SH3D19Q5HYK7 790 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 ATG9AQ7Z3C6 839 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 ZGPATQ8N5A5 531 aaKnown RBP11.72□□□□□ -0.53
NEDD9-203ENST00000397378 FAM163AQ96GL9 167 aaPredicted RBP11.72□□□□□ -0.53
NEDD9-203ENST00000397378 PBX4Q9BYU1 374 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 OSBPL5Q9H0X9 879 aaPredicted RBP11.72□□□□□ -0.53
NEDD9-203ENST00000397378 AS3MTQ9HBK9 375 aa11.72□□□□□ -0.53
NEDD9-203ENST00000397378 USP17L5A8MUK1 530 aa11.71□□□□□ -0.53
NEDD9-203ENST00000397378 TBC1D12O60347 775 aa11.71□□□□□ -0.53
NEDD9-203ENST00000397378 GLRX3O76003 335 aaKnown RBP11.71□□□□□ -0.53
NEDD9-203ENST00000397378 TLE2Q04725 743 aa11.71□□□□□ -0.53
NEDD9-203ENST00000397378 MTMR2Q13614 643 aa11.71□□□□□ -0.53
NEDD9-203ENST00000397378 SKIV2LQ15477 1246 aaKnown RBP11.71□□□□□ -0.53
NEDD9-203ENST00000397378 ATP2B3Q16720 1220 aa11.71□□□□□ -0.53
NEDD9-203ENST00000397378 MRS2Q9HD23 443 aa11.71□□□□□ -0.53
NEDD9-203ENST00000397378 DDX4Q9NQI0 724 aaKnown RBP11.71□□□□□ -0.53
NEDD9-203ENST00000397378 RBPJLQ9UBG7 517 aa11.71□□□□□ -0.53
NEDD9-203ENST00000397378 PIEZO1Q92508 2521 aa11.71□□□□□ -0.53
NEDD9-203ENST00000397378 MYO9BQ13459 2157 aa11.71□□□□□ -0.54
NEDD9-203ENST00000397378 MUC6Q6W4X9 2439 aa11.7□□□□□ -0.54
NEDD9-203ENST00000397378 PDS5AQ29RF7 1337 aaKnown RBP11.7□□□□□ -0.54
NEDD9-203ENST00000397378 GRXCR1A8MXD5 290 aa11.7□□□□□ -0.54
NEDD9-203ENST00000397378 GPR37L1O60883 481 aa11.7□□□□□ -0.54
NEDD9-203ENST00000397378 NPM3O75607 178 aaKnown RBP11.7□□□□□ -0.54
NEDD9-203ENST00000397378 CIAO1O76071 339 aa11.7□□□□□ -0.54
NEDD9-203ENST00000397378 HOXA7P31268 230 aaPredicted RBP11.7□□□□□ -0.54
NEDD9-203ENST00000397378 PHKA1P46020 1223 aa11.7□□□□□ -0.54
NEDD9-203ENST00000397378 SLF2Q8IX21 1173 aa11.7□□□□□ -0.54
NEDD9-203ENST00000397378 MRPL50Q8N5N7 158 aaKnown RBP11.7□□□□□ -0.54
NEDD9-203ENST00000397378 TRPV1Q8NER1 839 aa11.7□□□□□ -0.54
NEDD9-203ENST00000397378 CEP126Q9P2H0 1117 aa11.7□□□□□ -0.54
NEDD9-203ENST00000397378 PQBP1O60828 265 aaKnown RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms