RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 FRMD4AQ9P2Q2 1039 aaPredicted RBP26.01■■□□□ 1.75
CLN3-207ENST00000395653 TSKSQ9UJT2 592 aa26.01■■□□□ 1.75
CLN3-207ENST00000395653 A0A0D9SFI3 127 aa26■■□□□ 1.75
CLN3-207ENST00000395653 GSPT1P15170 499 aaKnown RBP26■■□□□ 1.75
CLN3-207ENST00000395653 LBX1P52954 281 aa26■■□□□ 1.75
CLN3-207ENST00000395653 ERICH6BQ5W0A0 696 aa26■■□□□ 1.75
CLN3-207ENST00000395653 FAM227BQ96M60 508 aa26■■□□□ 1.75
CLN3-207ENST00000395653 EPB41L4AQ9HCS5 686 aaPredicted RBP26■■□□□ 1.75
CLN3-207ENST00000395653 SWAP70Q9UH65 585 aa26■■□□□ 1.75
CLN3-207ENST00000395653 PHIPQ8WWQ0 1821 aa26■■□□□ 1.75
CLN3-207ENST00000395653 USP17L5A8MUK1 530 aa25.99■■□□□ 1.75
CLN3-207ENST00000395653 GDF11O95390 407 aa25.99■■□□□ 1.75
CLN3-207ENST00000395653 APPP05067 770 aa25.99■■□□□ 1.75
CLN3-207ENST00000395653 NMIQ13287 307 aaPredicted RBP25.99■■□□□ 1.75
CLN3-207ENST00000395653 MCMDC2Q4G0Z9 681 aa25.99■■□□□ 1.75
CLN3-207ENST00000395653 NACAP1Q9BZK3 213 aa25.99■■□□□ 1.75
CLN3-207ENST00000395653 PRDM10Q9NQV6 1147 aa25.99■■□□□ 1.75
CLN3-207ENST00000395653 ZBTB21Q9ULJ3 1066 aa25.99■■□□□ 1.75
CLN3-207ENST00000395653 CYP2D7A0A087X1C5 515 aa25.98■■□□□ 1.75
CLN3-207ENST00000395653 HIP1O00291 1037 aa25.98■■□□□ 1.75
CLN3-207ENST00000395653 TDO2P48775 406 aa25.98■■□□□ 1.75
CLN3-207ENST00000395653 JAG1P78504 1218 aa25.98■■□□□ 1.75
CLN3-207ENST00000395653 CERKLQ49MI3 558 aaPredicted RBP25.98■■□□□ 1.75
CLN3-207ENST00000395653 CCDC129Q6ZRS4 1044 aa25.98■■□□□ 1.75
CLN3-207ENST00000395653 CCDC84Q86UT8 332 aaPredicted RBP25.98■■□□□ 1.75
CLN3-207ENST00000395653 IFNL3Q8IZI9 196 aa25.98■■□□□ 1.75
CLN3-207ENST00000395653 AS3MTQ9HBK9 375 aa25.98■■□□□ 1.75
CLN3-207ENST00000395653 A0A0G2JLL6 359 aaPredicted RBP25.97■■□□□ 1.75
CLN3-207ENST00000395653 PRRT2Q7Z6L0 340 aaPredicted RBP25.97■■□□□ 1.75
CLN3-207ENST00000395653 DYNLL2Q96FJ2 89 aa25.97■■□□□ 1.75
CLN3-207ENST00000395653 ZCCHC17Q9NP64 241 aaKnown RBP25.97■■□□□ 1.75
CLN3-207ENST00000395653 C16orf86Q6ZW13 317 aa25.97■■□□□ 1.75
CLN3-207ENST00000395653 ZNF280CQ8ND82 737 aa25.97■■□□□ 1.75
CLN3-207ENST00000395653 DIAPH3Q9NSV4 1193 aa25.97■■□□□ 1.75
CLN3-207ENST00000395653 ROBO3Q96MS0 1386 aa25.96■■□□□ 1.75
CLN3-207ENST00000395653 TRIM75PA6NK02 468 aa25.96■■□□□ 1.75
CLN3-207ENST00000395653 GH2P01242 217 aa25.96■■□□□ 1.75
CLN3-207ENST00000395653 MOGSQ13724 837 aa25.96■■□□□ 1.75
CLN3-207ENST00000395653 ABCB5Q2M3G0 1257 aa25.96■■□□□ 1.75
CLN3-207ENST00000395653 SHROOM1Q2M3G4 852 aaPredicted RBP25.96■■□□□ 1.75
CLN3-207ENST00000395653 FAM43AQ8N2R8 423 aa25.96■■□□□ 1.75
CLN3-207ENST00000395653 SLC44A5Q8NCS7 719 aa25.96■■□□□ 1.75
CLN3-207ENST00000395653 WDR18Q9BV38 432 aa25.96■■□□□ 1.75
CLN3-207ENST00000395653 BTBD19C9JJ37 291 aa25.95■■□□□ 1.74
CLN3-207ENST00000395653 SMIM22K7EJ46 135 aa25.95■■□□□ 1.74
CLN3-207ENST00000395653 FOXP2O15409 715 aa25.95■■□□□ 1.74
CLN3-207ENST00000395653 TBC1D8O95759 1140 aa25.95■■□□□ 1.74
CLN3-207ENST00000395653 SPP2Q13103 211 aa25.95■■□□□ 1.74
CLN3-207ENST00000395653 FASTKD5Q7L8L6 764 aaKnown RBP25.95■■□□□ 1.74
CLN3-207ENST00000395653 NAPBQ9H115 298 aa25.95■■□□□ 1.74
CLN3-207ENST00000395653 CABP5Q9NP86 173 aa25.95■■□□□ 1.74
CLN3-207ENST00000395653 CCDC171Q6TFL3 1326 aa25.94■■□□□ 1.74
CLN3-207ENST00000395653 PTPRFP10586 1907 aa25.94■■□□□ 1.74
CLN3-207ENST00000395653 MINDY4BA8MYZ0 360 aa25.94■■□□□ 1.74
CLN3-207ENST00000395653 CDK8P49336 464 aa25.94■■□□□ 1.74
CLN3-207ENST00000395653 MFAP1P55081 439 aaKnown RBP25.94■■□□□ 1.74
CLN3-207ENST00000395653 NOM1Q5C9Z4 860 aaKnown RBP25.94■■□□□ 1.74
CLN3-207ENST00000395653 ANKRD23Q86SG2 305 aa25.94■■□□□ 1.74
CLN3-207ENST00000395653 VPS53Q5VIR6 699 aa25.93■■□□□ 1.74
CLN3-207ENST00000395653 ZNF589Q86UQ0 364 aaPredicted RBP25.93■■□□□ 1.74
CLN3-207ENST00000395653 CWC27Q6UX04 472 aaKnown RBP25.92■■□□□ 1.74
CLN3-207ENST00000395653 CCDC17Q96LX7 622 aa25.92■■□□□ 1.74
CLN3-207ENST00000395653 CRHR2Q13324 411 aa25.91■■□□□ 1.74
CLN3-207ENST00000395653 TAF1CQ15572 869 aaPredicted RBP25.91■■□□□ 1.74
CLN3-207ENST00000395653 SH3D19Q5HYK7 790 aa25.91■■□□□ 1.74
CLN3-207ENST00000395653 MYH8P13535 1937 aa25.91■■□□□ 1.74
CLN3-207ENST00000395653 BACE1P56817 501 aa25.9■■□□□ 1.74
CLN3-207ENST00000395653 RAB3GAP1Q15042 981 aa25.9■■□□□ 1.74
CLN3-207ENST00000395653 ALX1Q15699 326 aa25.9■■□□□ 1.74
CLN3-207ENST00000395653 GPAT2Q6NUI2 795 aa25.9■■□□□ 1.74
CLN3-207ENST00000395653 TMEM179Q6ZVK1 233 aa25.9■■□□□ 1.74
CLN3-207ENST00000395653 PROCA1Q8NCQ7 364 aaPredicted RBP25.9■■□□□ 1.74
CLN3-207ENST00000395653 R3HDMLQ9H3Y0 253 aa25.9■■□□□ 1.74
CLN3-207ENST00000395653 PPP4R2Q9NY27 417 aa25.9■■□□□ 1.74
CLN3-207ENST00000395653 ZMYM6O95789 1325 aa25.9■■□□□ 1.74
CLN3-207ENST00000395653 USP17L10C9JJH3 530 aa25.89■■□□□ 1.74
CLN3-207ENST00000395653 MPHOSPH10O00566 681 aaKnown RBP25.89■■□□□ 1.74
CLN3-207ENST00000395653 HSPD1P10809 573 aaKnown RBP25.89■■□□□ 1.74
CLN3-207ENST00000395653 GUCY1A2P33402 732 aa25.89■■□□□ 1.74
CLN3-207ENST00000395653 GADL1Q6ZQY3 521 aa25.89■■□□□ 1.74
CLN3-207ENST00000395653 ZNF287Q9HBT7 754 aa25.89■■□□□ 1.74
CLN3-207ENST00000395653 ZFYVE28Q9HCC9 887 aa25.89■■□□□ 1.74
CLN3-207ENST00000395653 LOC285556D6RIA3 1793 aa25.89■■□□□ 1.73
CLN3-207ENST00000395653 C19orf81C9J6K1 198 aa25.88■■□□□ 1.73
CLN3-207ENST00000395653 GPR25O00155 361 aa25.88■■□□□ 1.73
CLN3-207ENST00000395653 PDHXO00330 501 aa25.88■■□□□ 1.73
CLN3-207ENST00000395653 PPARAQ07869 468 aa25.88■■□□□ 1.73
CLN3-207ENST00000395653 MTMR2Q13614 643 aa25.88■■□□□ 1.73
CLN3-207ENST00000395653 SLC45A1Q9Y2W3 748 aa25.88■■□□□ 1.73
CLN3-207ENST00000395653 SLC3A2P08195 630 aaKnown RBP25.88■■□□□ 1.73
CLN3-207ENST00000395653 AKR1B1P15121 316 aa25.88■■□□□ 1.73
CLN3-207ENST00000395653 HMGCS2P54868 508 aa25.88■■□□□ 1.73
CLN3-207ENST00000395653 SEPT2Q15019 361 aa25.88■■□□□ 1.73
CLN3-207ENST00000395653 AGTPBP1Q9UPW5 1226 aa25.88■■□□□ 1.73
CLN3-207ENST00000395653 COL13A1Q5TAT6 717 aaPredicted RBP25.87■■□□□ 1.73
CLN3-207ENST00000395653 SKAP1Q86WV1 359 aa25.87■■□□□ 1.73
CLN3-207ENST00000395653 MKNK2Q9HBH9 465 aa25.87■■□□□ 1.73
CLN3-207ENST00000395653 RAD50Q92878 1312 aa25.86■■□□□ 1.73
CLN3-207ENST00000395653 FGAP02671 866 aa25.86■■□□□ 1.73
CLN3-207ENST00000395653 CHMLP26374 656 aa25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms