RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 KRT25Q7Z3Z0 450 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 MYCT1Q8N699 235 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 UBAP1LF5GYI3 381 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 PSMD6Q15008 389 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 CCDC170Q8IYT3 715 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 USTQ9Y2C2 406 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 UHRF1BP1LA0JNW5 1464 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 POLR2DO15514 142 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 GNA14O95837 355 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 MLKLQ8NB16 471 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 GGA1Q9UJY5 639 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 ABCA10Q8WWZ4 1543 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 ZNF853P0CG23 659 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 ARHGAP25P42331 645 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 TXKP42681 527 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 PAK2Q13177 524 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 TTC38Q5R3I4 469 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 P3H4Q92791 437 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 MRPL44Q9H9J2 332 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 JAG2Q9Y219 1238 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 TRPM2O94759 1503 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 B4E1Z4 1266 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 GCNT3O95395 438 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 CWF19L2Q2TBE0 894 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 DENND2CQ68D51 928 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 URB2Q14146 1524 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 PPP2R5CQ13362 524 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 PPP2R5BQ15173 497 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 CFAP221Q4G0U5 840 aa14.19□□□□□ -0.14
CCDC88C-204ENST00000389857 VSIG1Q86XK7 387 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 TMTC1Q8IUR5 882 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 GTF3C6Q969F1 213 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 IRX4P78413 519 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 MUM1L1Q5H9M0 696 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 EIF4G3O43432 1585 aaKnown RBP14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 RASSF2P50749 326 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 MTHFSDQ2M296 383 aaKnown RBP14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 RAB17Q9H0T7 212 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 ANGEL1Q9UNK9 670 aaKnown RBP14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 INPP5BP32019 993 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 RNASE9P60153 205 aaKnown RBP14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 NUP160Q12769 1436 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 GNPATO15228 680 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 SFMBT2Q5VUG0 894 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 TEKT1Q969V4 418 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 TBC1D8O95759 1140 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 EIF6P56537 245 aaKnown RBP14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 MAP3K21Q5TCX8 1036 aa14.18□□□□□ -0.14
CCDC88C-204ENST00000389857 KRT19P08727 400 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 NLRP12P59046 1061 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 SUPT20HQ8NEM7 779 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 PPP4R1Q8TF05 950 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 TEX14Q8IWB6 1497 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 OTUD6AQ7L8S5 288 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 CCDC105Q8IYK2 499 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 RIMS2Q9UQ26 1411 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 SNX29Q8TEQ0 813 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 RABGAP1Q9Y3P9 1069 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 KRT15P19012 456 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 ITGA6P23229 1130 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 ARMT1Q9H993 441 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 DDX39AO00148 427 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 SPOUT1Q5T280 376 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 PLEKHM2Q8IWE5 1019 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 GRIN2AQ12879 1464 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 SLC27A2O14975 620 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 WDR46O15213 610 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 PHBP35232 272 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 FANCCQ00597 558 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 PPFIA1Q13136 1202 aa14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 YTHDC2Q9H6S0 1430 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-204ENST00000389857 RNMTO43148 476 aaKnown RBP14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 HAUS8Q9BT25 410 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 USP26Q9BXU7 913 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 IBTKQ9P2D0 1353 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 KDM3AQ9Y4C1 1321 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 CEP104O60308 925 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 ERCC3P19447 782 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 PLCB4Q15147 1175 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 NONOQ15233 471 aaKnown RBP eCLIP14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 RNF10Q8N5U6 811 aaKnown RBP14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 RSAD2Q8WXG1 361 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 AOX1Q06278 1338 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 EXOC3O60645 756 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 RPS6KA1Q15418 735 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 PPP1R12CQ9BZL4 782 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 VCX3AQ9NNX9 186 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 MAEAQ7L5Y9 396 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 PEX26Q7Z412 305 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 PLBD2Q8NHP8 589 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 RILPQ96NA2 401 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 TRIM31Q9BZY9 425 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 PDE8AO60658 829 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 CLSTN2Q9H4D0 955 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 RPS6KA2Q15349 733 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 BEND3Q5T5X7 828 aa14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 CDCA7Q9BWT1 371 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-204ENST00000389857 KRT3P12035 628 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 KLHL30Q0D2K2 578 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms