RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 TROAPQ12815 778 aa29.22■■■□□ 2.27
SHOX2-201ENST00000389589 GNL2Q13823 731 aaKnown RBP29.22■■■□□ 2.27
SHOX2-201ENST00000389589 MAPKAPK5Q8IW41 473 aa29.22■■■□□ 2.27
SHOX2-201ENST00000389589 DACT1Q9NYF0 836 aa29.22■■■□□ 2.27
SHOX2-201ENST00000389589 G3V3G9 751 aa29.21■■■□□ 2.27
SHOX2-201ENST00000389589 DCAF8Q5TAQ9 597 aa29.21■■■□□ 2.27
SHOX2-201ENST00000389589 KCNG4Q8TDN1 519 aa29.21■■■□□ 2.27
SHOX2-201ENST00000389589 U2AF2P26368 475 aaKnown RBP eCLIP29.21■■■□□ 2.27
SHOX2-201ENST00000389589 RHBDL3P58872 404 aa29.21■■■□□ 2.27
SHOX2-201ENST00000389589 CNKSR1Q969H4 720 aa29.21■■■□□ 2.27
SHOX2-201ENST00000389589 MKNK2Q9HBH9 465 aa29.21■■■□□ 2.27
SHOX2-201ENST00000389589 AKAP17AQ02040 695 aaKnown RBP29.2■■■□□ 2.26
SHOX2-201ENST00000389589 LINC00301Q8NCQ3 95 aa29.2■■■□□ 2.26
SHOX2-201ENST00000389589 CCDC173Q0VFZ6 552 aa29.19■■■□□ 2.26
SHOX2-201ENST00000389589 STK38Q15208 465 aa29.19■■■□□ 2.26
SHOX2-201ENST00000389589 SAFBQ15424 915 aaKnown RBP eCLIP29.19■■■□□ 2.26
SHOX2-201ENST00000389589 FBXW7Q969H0 707 aa29.19■■■□□ 2.26
SHOX2-201ENST00000389589 ME1P48163 572 aa29.19■■■□□ 2.26
SHOX2-201ENST00000389589 TFAP4Q01664 338 aa29.19■■■□□ 2.26
SHOX2-201ENST00000389589 MAP3K11Q16584 847 aa29.19■■■□□ 2.26
SHOX2-201ENST00000389589 DGKHQ86XP1 1220 aa29.19■■■□□ 2.26
SHOX2-201ENST00000389589 FBXO41Q8TF61 875 aa29.19■■■□□ 2.26
SHOX2-201ENST00000389589 CLSTN2Q9H4D0 955 aa29.19■■■□□ 2.26
SHOX2-201ENST00000389589 DAGLAQ9Y4D2 1042 aa29.19■■■□□ 2.26
SHOX2-201ENST00000389589 PODNQ7Z5L7 613 aa29.18■■■□□ 2.26
SHOX2-201ENST00000389589 ANKS1AQ92625 1134 aa29.18■■■□□ 2.26
SHOX2-201ENST00000389589 TCP11L1Q9NUJ3 509 aa29.18■■■□□ 2.26
SHOX2-201ENST00000389589 FLT1P17948 1338 aa29.18■■■□□ 2.26
SHOX2-201ENST00000389589 GUCY1A2P33402 732 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 DOK7Q18PE1 504 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 ZNF444Q8N0Y2 327 aaPredicted RBP29.17■■■□□ 2.26
SHOX2-201ENST00000389589 CTCFLQ8NI51 663 aaPredicted RBP29.17■■■□□ 2.26
SHOX2-201ENST00000389589 DYNLL2Q96FJ2 89 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 FUCA2Q9BTY2 467 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 TNMDQ9H2S6 317 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 CLIC4Q9Y696 253 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 PRPF3O43395 683 aaKnown RBP29.17■■■□□ 2.26
SHOX2-201ENST00000389589 NMT2O60551 498 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 MMP1P03956 469 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 SF3A1Q15459 793 aaKnown RBP29.17■■■□□ 2.26
SHOX2-201ENST00000389589 SLC4A8Q2Y0W8 1093 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 ANO1Q5XXA6 986 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 CCAR1Q8IX12 1150 aaKnown RBP29.17■■■□□ 2.26
SHOX2-201ENST00000389589 CCDC82Q8N4S0 544 aa29.17■■■□□ 2.26
SHOX2-201ENST00000389589 GNL3Q9BVP2 549 aaKnown RBP eCLIP29.17■■■□□ 2.26
SHOX2-201ENST00000389589 SAP30BPQ9UHR5 308 aaKnown RBP29.17■■■□□ 2.26
SHOX2-201ENST00000389589 NR1I2O75469 434 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 SF3B2Q13435 895 aaKnown RBP29.16■■■□□ 2.26
SHOX2-201ENST00000389589 ADALQ6DHV7 355 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 CCDC73Q6ZRK6 1079 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 A0A1W2PQ27 194 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 A0A1W2PQ64 194 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 A0A1W2PQD8 194 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 XBP1P17861 261 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 PLCD1P51178 756 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 FUT2Q10981 343 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 CMTR1Q8N1G2 835 aaKnown RBP29.16■■■□□ 2.26
SHOX2-201ENST00000389589 CERS5Q8N5B7 392 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 PPP1R9BQ96SB3 815 aa29.16■■■□□ 2.26
SHOX2-201ENST00000389589 UBE2Q2LH0YL09 131 aa29.15■■■□□ 2.26
SHOX2-201ENST00000389589 SPTLC2O15270 562 aa29.15■■■□□ 2.26
SHOX2-201ENST00000389589 BAG6P46379 1132 aa29.15■■■□□ 2.26
SHOX2-201ENST00000389589 RCSD1Q6JBY9 416 aa29.15■■■□□ 2.26
SHOX2-201ENST00000389589 TMTC3Q6ZXV5 915 aa29.15■■■□□ 2.26
SHOX2-201ENST00000389589 PCDHA7Q9UN72 937 aa29.15■■■□□ 2.26
SHOX2-201ENST00000389589 TTF2Q9UNY4 1162 aaKnown RBP29.15■■■□□ 2.26
SHOX2-201ENST00000389589 TSPY3P0CV98 308 aa29.14■■■□□ 2.26
SHOX2-201ENST00000389589 TSPY8P0CW00 308 aa29.14■■■□□ 2.26
SHOX2-201ENST00000389589 CCDC192P0DO97 292 aa29.14■■■□□ 2.26
SHOX2-201ENST00000389589 RBM43Q6ZSC3 357 aaKnown RBP29.14■■■□□ 2.26
SHOX2-201ENST00000389589 C16orf86Q6ZW13 317 aa29.14■■■□□ 2.26
SHOX2-201ENST00000389589 MAP3K14Q99558 947 aa29.14■■■□□ 2.26
SHOX2-201ENST00000389589 FOXP1Q9H334 677 aaPredicted RBP29.14■■■□□ 2.26
SHOX2-201ENST00000389589 KAT14Q9H8E8 782 aa29.14■■■□□ 2.26
SHOX2-201ENST00000389589 UVSSAQ2YD98 709 aa29.14■■■□□ 2.25
SHOX2-201ENST00000389589 RNF214Q8ND24 703 aa29.14■■■□□ 2.25
SHOX2-201ENST00000389589 KIF5BP33176 963 aa29.13■■■□□ 2.25
SHOX2-201ENST00000389589 CC2D2BQ6DHV5 1058 aa29.13■■■□□ 2.25
SHOX2-201ENST00000389589 FKBP1AP62942 108 aaKnown RBP29.13■■■□□ 2.25
SHOX2-201ENST00000389589 HHIPL2Q6UWX4 724 aa29.13■■■□□ 2.25
SHOX2-201ENST00000389589 NOSTRINQ8IVI9 506 aa29.13■■■□□ 2.25
SHOX2-201ENST00000389589 IL17RBQ9NRM6 502 aa29.13■■■□□ 2.25
SHOX2-201ENST00000389589 PLEKHA8P1O95397 391 aa29.12■■■□□ 2.25
SHOX2-201ENST00000389589 RASA1P20936 1047 aa29.12■■■□□ 2.25
SHOX2-201ENST00000389589 CHRNA5P30532 468 aa29.12■■■□□ 2.25
SHOX2-201ENST00000389589 FAM160A1Q05DH4 1040 aa29.12■■■□□ 2.25
SHOX2-201ENST00000389589 SLC39A14Q15043 492 aa29.12■■■□□ 2.25
SHOX2-201ENST00000389589 CAMK4Q16566 473 aa29.12■■■□□ 2.25
SHOX2-201ENST00000389589 DIS3L2Q8IYB7 885 aaKnown RBP29.12■■■□□ 2.25
SHOX2-201ENST00000389589 CTAGE5O15320 804 aa29.11■■■□□ 2.25
SHOX2-201ENST00000389589 CDK8P49336 464 aa29.11■■■□□ 2.25
SHOX2-201ENST00000389589 MRPS27Q92552 414 aaKnown RBP29.11■■■□□ 2.25
SHOX2-201ENST00000389589 TAOK2Q9UL54 1235 aa29.11■■■□□ 2.25
SHOX2-201ENST00000389589 F8W031 263 aaPredicted RBP29.11■■■□□ 2.25
SHOX2-201ENST00000389589 FSIP1Q8NA03 581 aa29.11■■■□□ 2.25
SHOX2-201ENST00000389589 MYH8P13535 1937 aa29.1■■■□□ 2.25
SHOX2-201ENST00000389589 PKN1Q16512 942 aa29.1■■■□□ 2.25
SHOX2-201ENST00000389589 JMYQ8N9B5 988 aa29.1■■■□□ 2.25
SHOX2-201ENST00000389589 GOLPH3LQ9H4A5 285 aa29.1■■■□□ 2.25
SHOX2-201ENST00000389589 KCNJ14Q9UNX9 436 aa29.1■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms