RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ABT1Q9ULW3 272 aaKnown RBP12.02□□□□□ -0.49
VPS53-202ENST00000389040 PAPPA2Q9BXP8 1791 aa12.02□□□□□ -0.49
VPS53-202ENST00000389040 FGAP02671 866 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 PLCD1P51178 756 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 NECTIN1Q15223 517 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 DEFB115Q30KQ5 88 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 DLK2Q6UY11 383 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 MIGA2Q7L4E1 593 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 ZNF589Q86UQ0 364 aaPredicted RBP12.01□□□□□ -0.49
VPS53-202ENST00000389040 MAP4K1Q92918 833 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 SLC10A4Q96EP9 437 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 SAP30BPQ9UHR5 308 aaKnown RBP12.01□□□□□ -0.49
VPS53-202ENST00000389040 SSC5DA1L4H1 1573 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 ZKSCAN1P17029 563 aaPredicted RBP12.01□□□□□ -0.49
VPS53-202ENST00000389040 CASTP20810 708 aaKnown RBP12.01□□□□□ -0.49
VPS53-202ENST00000389040 FMR1Q06787 632 aaKnown RBP eCLIP12.01□□□□□ -0.494e-8■■■■■ 46.3
VPS53-202ENST00000389040 PDE4BQ07343 736 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 RGMBQ6NW40 437 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 C16orf86Q6ZW13 317 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 CDAN1Q8IWY9 1227 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 WRNIP1Q96S55 665 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 TM6SF1Q9BZW5 370 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 GZF1Q9H116 711 aaPredicted RBP12.01□□□□□ -0.49
VPS53-202ENST00000389040 ZDHHC9Q9Y397 364 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 RBM8AQ9Y5S9 174 aaKnown RBP12.01□□□□□ -0.49
VPS53-202ENST00000389040 ROBO3Q96MS0 1386 aa12.01□□□□□ -0.49
VPS53-202ENST00000389040 FOXP2O15409 715 aa12□□□□□ -0.49
VPS53-202ENST00000389040 ASNSP08243 561 aa12□□□□□ -0.49
VPS53-202ENST00000389040 ZBTB48P10074 688 aaPredicted RBP12□□□□□ -0.49
VPS53-202ENST00000389040 CREB3L3Q68CJ9 461 aa12□□□□□ -0.49
VPS53-202ENST00000389040 CCDC129Q6ZRS4 1044 aa12□□□□□ -0.49
VPS53-202ENST00000389040 EPB41L4AQ9HCS5 686 aaPredicted RBP12□□□□□ -0.49
VPS53-202ENST00000389040 U3KPZ7 1027 aaPredicted RBP12□□□□□ -0.49
VPS53-202ENST00000389040 MYO5AQ9Y4I1 1855 aaKnown RBP12□□□□□ -0.49
VPS53-202ENST00000389040 MYH7P12883 1935 aa12□□□□□ -0.49
VPS53-202ENST00000389040 UBE2Q2LH0YL09 131 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 FGRP09769 529 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 CAP2P40123 477 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 AK2P54819 239 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 PPATQ06203 517 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.99□□□□□ -0.49
VPS53-202ENST00000389040 ERO1BQ86YB8 467 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 SCYL3Q8IZE3 742 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 JAKMIP1Q96N16 626 aaKnown RBP11.99□□□□□ -0.49
VPS53-202ENST00000389040 RNF41Q9H4P4 317 aaPredicted RBP11.99□□□□□ -0.49
VPS53-202ENST00000389040 ZSWIM6Q9HCJ5 1215 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 PICK1Q9NRD5 415 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 ZNF213O14771 459 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 MAP2K2P36507 400 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 INHBEP58166 350 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 PPARAQ07869 468 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 NOGQ13253 232 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 IMMTQ16891 758 aaKnown RBP11.99□□□□□ -0.49
VPS53-202ENST00000389040 ADCK5Q3MIX3 580 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 CERKLQ49MI3 558 aaPredicted RBP11.99□□□□□ -0.49
VPS53-202ENST00000389040 PPP4R3BQ5MIZ7 849 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 VPS53Q5VIR6 699 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 LIMCH1Q9UPQ0 1083 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 CYP46A1Q9Y6A2 500 aa11.99□□□□□ -0.49
VPS53-202ENST00000389040 MINDY4BA8MYZ0 360 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 SLC27A2O14975 620 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 ZNF157P51786 506 aaPredicted RBP11.98□□□□□ -0.49
VPS53-202ENST00000389040 VGLL4Q14135 290 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 L1TD1Q5T7N2 865 aaKnown RBP11.98□□□□□ -0.49
VPS53-202ENST00000389040 RNF20Q5VTR2 975 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 RUFY3Q7L099 469 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 CABP5Q9NP86 173 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 PDRG1Q9NUG6 133 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 POLR2AP24928 1970 aaKnown RBP11.98□□□□□ -0.49
VPS53-202ENST00000389040 SPDYE5A6NIY4 337 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 BRD1O95696 1058 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 CPA1P15085 419 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 SHMT1P34896 483 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 CDK8P49336 464 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 PRKG1Q13976 671 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 MCTP1Q6DN14 999 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 DNAJC18Q9H819 358 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 MKNK2Q9HBH9 465 aa11.98□□□□□ -0.49
VPS53-202ENST00000389040 FOCADQ5VW36 1801 aa11.97□□□□□ -0.49
VPS53-202ENST00000389040 FSD2A1L4K1 749 aa11.97□□□□□ -0.49
VPS53-202ENST00000389040 GOLGA6L3A6NEY3 463 aa11.97□□□□□ -0.49
VPS53-202ENST00000389040 CXCL11O14625 94 aa11.97□□□□□ -0.49
VPS53-202ENST00000389040 ORC4O43929 436 aa11.97□□□□□ -0.49
VPS53-202ENST00000389040 SLC10A3P09131 477 aa11.97□□□□□ -0.49
VPS53-202ENST00000389040 TMEM179Q6ZVK1 233 aa11.97□□□□□ -0.49
VPS53-202ENST00000389040 ZNF444Q8N0Y2 327 aaPredicted RBP11.97□□□□□ -0.49
VPS53-202ENST00000389040 ZKSCAN4Q969J2 545 aaPredicted RBP11.97□□□□□ -0.49
VPS53-202ENST00000389040 AS3MTQ9HBK9 375 aa11.97□□□□□ -0.49
VPS53-202ENST00000389040 SNCAIPQ9Y6H5 919 aa11.97□□□□□ -0.49
VPS53-202ENST00000389040 TRPM7Q96QT4 1865 aa11.97□□□□□ -0.49
VPS53-202ENST00000389040 USP17L5A8MUK1 530 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 PTPRAP18433 802 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 PSMA5P28066 241 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 INPP5BP32019 993 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 PPIL2Q13356 520 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 ABCB5Q2M3G0 1257 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 SPRYD7Q5W111 196 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 MOB2Q70IA6 237 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 STAG1Q8WVM7 1258 aa11.96□□□□□ -0.49
VPS53-202ENST00000389040 WDR18Q9BV38 432 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms