RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 B4GALNT4Q76KP1 1039 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 CCDC84Q86UT8 332 aaPredicted RBP12.77□□□□□ -0.36
PTPRF-203ENST00000372407 PHKBQ93100 1093 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 EYA3Q99504 573 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 DSCC1Q9BVC3 393 aa12.77□□□□□ -0.36
PTPRF-203ENST00000372407 MYSM1Q5VVJ2 828 aa12.77□□□□□ -0.37
PTPRF-203ENST00000372407 NKIRAS1Q9NYS0 192 aa12.77□□□□□ -0.37
PTPRF-203ENST00000372407 CLTCL1P53675 1640 aa12.77□□□□□ -0.37
PTPRF-203ENST00000372407 ANKARQ7Z5J8 1434 aa12.77□□□□□ -0.37
PTPRF-203ENST00000372407 ADALQ6DHV7 355 aa12.77□□□□□ -0.37
PTPRF-203ENST00000372407 CCDC63Q8NA47 563 aa12.77□□□□□ -0.37
PTPRF-203ENST00000372407 USP44Q9H0E7 712 aa12.77□□□□□ -0.37
PTPRF-203ENST00000372407 STIM2Q9P246 746 aa12.77□□□□□ -0.37
PTPRF-203ENST00000372407 TXNDC16Q9P2K2 825 aa12.77□□□□□ -0.37
PTPRF-203ENST00000372407 ABCC4O15439 1325 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 SPATA31A3Q5VYP0 1347 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 SETD1BQ9UPS6 1966 aaKnown RBP12.76□□□□□ -0.37
PTPRF-203ENST00000372407 SPOPO43791 374 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 TNFAIP3P21580 790 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 TXKP42681 527 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 ME3Q16798 604 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 NOX5Q96PH1 765 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.76□□□□□ -0.37
PTPRF-203ENST00000372407 IBTKQ9P2D0 1353 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-203ENST00000372407 BLMP54132 1417 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-203ENST00000372407 DTNBO60941 627 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 A1BGP04217 495 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 PLS1Q14651 629 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 UTP14CQ5TAP6 766 aaKnown RBP12.76□□□□□ -0.37
PTPRF-203ENST00000372407 CSRNP2Q9H175 543 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 VEZTQ9HBM0 779 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 PABPN1LA6NDY0 278 aaKnown RBP12.76□□□□□ -0.37
PTPRF-203ENST00000372407 NONOQ15233 471 aaKnown RBP eCLIP12.76□□□□□ -0.37
PTPRF-203ENST00000372407 SECISBP2LQ93073 1101 aaKnown RBP12.76□□□□□ -0.37
PTPRF-203ENST00000372407 LRWD1Q9UFC0 647 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 BACH1O14867 736 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 GSPT1P15170 499 aaKnown RBP12.76□□□□□ -0.37
PTPRF-203ENST00000372407 ALDH3A1P30838 453 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 MAP3K9P80192 1104 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 INF2Q27J81 1249 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 KRT25Q7Z3Z0 450 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 UNC5CLQ8IV45 518 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 KIAA1524Q8TCG1 905 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 MYL10Q9BUA6 226 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 TAB2Q9NYJ8 693 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 KIAA1468Q9P260 1216 aa12.76□□□□□ -0.37
PTPRF-203ENST00000372407 SSH2Q76I76 1423 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 E7EWF7 191 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 EIF4A1P60842 406 aaKnown RBP12.75□□□□□ -0.37
PTPRF-203ENST00000372407 IFT20Q8IY31 132 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 GPR161Q8N6U8 529 aaKnown RBP12.75□□□□□ -0.37
PTPRF-203ENST00000372407 FAM212AQ96EL1 285 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 XPO4Q9C0E2 1151 aaKnown RBP12.75□□□□□ -0.37
PTPRF-203ENST00000372407 SLC52A2Q9HAB3 445 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 NDUFB9Q9Y6M9 179 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 MTX1Q13505 466 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 HERC4Q5GLZ8 1057 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-203ENST00000372407 ARHGEF25Q86VW2 580 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 ZNF496Q96IT1 587 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-203ENST00000372407 SSX2IPQ9Y2D8 614 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 NCBP1Q09161 790 aaKnown RBP12.75□□□□□ -0.37
PTPRF-203ENST00000372407 AKNAD1Q5T1N1 836 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 CERS3Q8IU89 383 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 ZNF274Q96GC6 653 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-203ENST00000372407 LRRIQ1Q96JM4 1722 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 GPCPD1Q9NPB8 672 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 ZBTB21Q9ULJ3 1066 aa12.75□□□□□ -0.37
PTPRF-203ENST00000372407 USP6P35125 1406 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 GOLGA6CA6NDK9 693 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 GNPATO15228 680 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 GOLGA6DP0CG33 693 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 HPDP32754 393 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-203ENST00000372407 ZAP70P43403 619 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 RUFY4Q6ZNE9 571 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-203ENST00000372407 PSMD1Q99460 953 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 GOLGA6AQ9NYA3 693 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.74□□□□□ -0.37
PTPRF-203ENST00000372407 VIMP08670 466 aaKnown RBP12.74□□□□□ -0.37
PTPRF-203ENST00000372407 ATP5DP30049 168 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 WDR66Q8TBY9 1149 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 KIFAP3Q92845 792 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 SPHKAPQ2M3C7 1700 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 BIRC3Q13489 604 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 KRBA2Q6ZNG9 492 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 FCHSD1Q86WN1 690 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 FNBP1Q96RU3 617 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 SH2D4AQ9H788 454 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 JCADQ9P266 1359 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 RIMBP2O15034 1052 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 CCNT1O60563 726 aaKnown RBP12.74□□□□□ -0.37
PTPRF-203ENST00000372407 CROCCP2Q86T23 111 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 TMEM87AQ8NBN3 555 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 SNX29Q8TEQ0 813 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 CARD10Q9BWT7 1032 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 MTMR6Q9Y217 621 aa12.74□□□□□ -0.37
PTPRF-203ENST00000372407 HSPA1LP34931 641 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 ASIC2Q16515 512 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 TRAPPC3LQ5T215 181 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 SLF1Q9BQI6 1058 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms