RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 ZBTB17Q13105 803 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 GRM1Q13255 1194 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 RBBP5Q15291 538 aaKnown RBP8.09□□□□□ -1.11
SYNE1-208ENST00000367256 KRT12Q99456 494 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 PLCB4Q15147 1175 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 MIER3Q7Z3K6 550 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 LRRC43Q8N309 656 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 P3H4Q92791 437 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 RILPQ96NA2 401 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 SMIM24O75264 130 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 IFIH1Q9BYX4 1025 aaKnown RBP8.09□□□□□ -1.11
SYNE1-208ENST00000367256 BABAM1Q9NWV8 329 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 FANCCQ00597 558 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 MAIP1Q8WWC4 291 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 NACA2Q9H009 215 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 RRAGDQ9NQL2 400 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-208ENST00000367256 CTTNBP2NLQ9P2B4 639 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 MIGA1Q8NAN2 632 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 HELLSQ9NRZ9 838 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 BLMP54132 1417 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-208ENST00000367256 PPIP5K1Q6PFW1 1433 aa8.09□□□□□ -1.11
SYNE1-208ENST00000367256 INPP1P49441 399 aa8.09□□□□□ -1.12
SYNE1-208ENST00000367256 KDM5DQ9BY66 1539 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 NLRP12P59046 1061 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 CEP85Q6P2H3 762 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 KSR2Q6VAB6 950 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 NSMCE1Q8WV22 266 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 COL17A1Q9UMD9 1497 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-208ENST00000367256 PHBP35232 272 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 DCUN1D2Q6PH85 259 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 CXorf38Q8TB03 319 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 SH2D4AQ9H788 454 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 KDM5BQ9UGL1 1544 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 CCDC169A6NNP5 214 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 HIP1RO75146 1068 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 SLC12A2P55011 1212 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 ZNF174Q15697 407 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 ANO1Q5XXA6 986 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 PHF8Q9UPP1 1060 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 TTLL3Q9Y4R7 772 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 A0A1B0GVL5 298 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 GCKP35557 465 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 SFMBT2Q5VUG0 894 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 SDCCAG3Q96C92 435 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 RIPOR2Q9Y4F9 1068 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 RNF40O75150 1001 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 LINS1Q8NG48 757 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 C14orf93Q9H972 538 aaKnown RBP8.08□□□□□ -1.12
SYNE1-208ENST00000367256 KCNH3Q9ULD8 1083 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 EIF4G3O43432 1585 aaKnown RBP8.08□□□□□ -1.12
SYNE1-208ENST00000367256 RGS16O15492 202 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-208ENST00000367256 RXRAP19793 462 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 SLC9C1Q4G0N8 1177 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 PEX26Q7Z412 305 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 XAGE3Q8WTP9 111 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 TMEM87BQ96K49 555 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 NYXQ9GZU5 481 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 STX2P32856 288 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 DMTNQ08495 405 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 ARMC9Q7Z3E5 817 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 KLHL7Q8IXQ5 586 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 SPDL1Q96EA4 605 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 HOMER3Q9NSC5 361 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 PPARDQ03181 441 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 TBC1D8BQ0IIM8 1120 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 KMT5BQ4FZB7 885 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 NGLY1Q96IV0 654 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 CARD10Q9BWT7 1032 aa8.08□□□□□ -1.12
SYNE1-208ENST00000367256 MEIS3Q99687 375 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 AK9Q5TCS8 1911 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 STAM2O75886 525 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 TROVE2P10155 538 aaKnown RBP eCLIP8.07□□□□□ -1.12
SYNE1-208ENST00000367256 ANKFY1Q9P2R3 1169 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 TRIM37O94972 964 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 LDHBP07195 334 aaKnown RBP8.07□□□□□ -1.12
SYNE1-208ENST00000367256 DBN1Q16643 649 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 KRT71Q3SY84 523 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 KDM2BQ8NHM5 1336 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 RPS6KB1P23443 525 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 LETM2Q2VYF4 491 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 ANKRD20A3Q5VUR7 823 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 BSPRYQ5W0U4 402 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 NXNQ6DKJ4 435 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 CSGALNACT2Q8N6G5 542 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 RABGGTAQ92696 567 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 MRFAP1L1Q96HT8 127 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 CEP104O60308 925 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 RAPGEF3O95398 923 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 TRIM58Q8NG06 486 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 BEND3Q5T5X7 828 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 TACO1Q9BSH4 297 aaKnown RBP8.07□□□□□ -1.12
SYNE1-208ENST00000367256 CBX8Q9HC52 389 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 MYO1AQ9UBC5 1043 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 WWC3Q9ULE0 1092 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 CTNNA1P35221 906 aaKnown RBP8.07□□□□□ -1.12
SYNE1-208ENST00000367256 HSP90AA5PQ58FG0 334 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 AP1ARQ63HQ0 302 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 JADE1Q6IE81 842 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 TM6SF1Q9BZW5 370 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 MRPL46Q9H2W6 279 aaKnown RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms